Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R5R73_RS07915 Genome accession   NZ_CP140261
Coordinates   1697658..1698911 (-) Length   417 a.a.
NCBI ID   WP_071232856.1    Uniprot ID   A0A1S2D8V8
Organism   Salinicola sp. LHM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1692658..1703911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R73_RS07890 (R5R73_07890) argJ 1693096..1694304 (+) 1209 WP_322529366.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  R5R73_RS07895 (R5R73_07895) - 1694402..1695355 (+) 954 WP_071232858.1 Nudix family hydrolase -
  R5R73_RS07900 (R5R73_07900) yacG 1695591..1695869 (-) 279 WP_322529367.1 DNA gyrase inhibitor YacG -
  R5R73_RS07905 (R5R73_07905) coaE 1695914..1696567 (-) 654 WP_322529368.1 dephospho-CoA kinase -
  R5R73_RS07910 (R5R73_07910) pilD 1696564..1697424 (-) 861 WP_322529369.1 A24 family peptidase Machinery gene
  R5R73_RS07915 (R5R73_07915) pilC 1697658..1698911 (-) 1254 WP_071232856.1 type II secretion system F family protein Machinery gene
  R5R73_RS07920 (R5R73_07920) pilB 1699027..1700754 (-) 1728 WP_322529370.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R5R73_RS07925 (R5R73_07925) - 1701209..1701736 (+) 528 WP_322529371.1 pilin -
  R5R73_RS07930 (R5R73_07930) - 1701857..1702141 (-) 285 WP_322529372.1 hypothetical protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45952.89 Da        Isoelectric Point: 10.5643

>NTDB_id=913313 R5R73_RS07915 WP_071232856.1 1697658..1698911(-) (pilC) [Salinicola sp. LHM]
MATSRKSAKSLKSSKPPRRVVMHRWQWRGKNLRGEVVSGELVASEIDEVRKELTRQKIIVKRITRKTGIFGLGRVKSRDI
TLFSRQLATMLRAGVPLLQGCKVVAETLKNPAMRNLVETLANDISAGSSFSEALARHPARFDRMFVNMVAAGEQAGALDK
MLERVASYREKVDTLKGRVKKALYYPTAVVLVGIGVTALLLVKVVPQFESLFQGFGAELPVFTQFTVNLSQLTQAYWWQA
VLALVVMILGVRQAMKRSPAFAYRAHQLALKLPVIGNIIDKGSIARFSRTLATTFNAGIPLVEALDTAAGATGNQVHQRA
IAEIREDVATGQQLNFAMRRTKVFPIMAVQMVSIGEEAGELDTMLDKVAEFYEEEVDNQVDTLTSLLEPFILVVLGTMVG
GLVVSMYLPIFQMGSAI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=913313 R5R73_RS07915 WP_071232856.1 1697658..1698911(-) (pilC) [Salinicola sp. LHM]
ATGGCGACCAGCCGGAAGTCAGCCAAGTCACTGAAGTCATCCAAGCCGCCTCGTCGGGTAGTCATGCACCGCTGGCAGTG
GCGCGGCAAGAACCTGCGTGGCGAAGTCGTCTCCGGGGAACTCGTCGCCAGCGAGATCGACGAGGTGCGCAAGGAGCTGA
CCCGCCAGAAGATCATCGTCAAGCGCATCACGCGCAAGACCGGCATCTTCGGCCTGGGCCGGGTCAAGTCTCGGGACATC
ACCCTGTTCTCGCGTCAGCTGGCCACCATGCTCCGGGCCGGCGTTCCGCTGCTGCAGGGCTGCAAGGTCGTCGCCGAGAC
GCTCAAGAACCCTGCCATGCGCAACCTGGTCGAGACACTGGCCAATGACATCAGCGCTGGCTCCAGCTTCTCGGAAGCGC
TGGCCAGGCACCCAGCGCGGTTCGACCGCATGTTCGTCAACATGGTCGCGGCCGGCGAACAGGCCGGTGCGCTGGACAAG
ATGCTCGAGCGCGTCGCCAGCTACCGCGAGAAGGTCGACACCCTGAAGGGGCGCGTCAAGAAAGCGCTCTACTATCCCAC
AGCGGTGGTTCTGGTCGGGATCGGCGTCACCGCCCTGCTGCTGGTCAAGGTCGTGCCCCAGTTCGAGAGCCTGTTTCAGG
GATTCGGCGCGGAATTGCCGGTCTTCACCCAGTTCACCGTGAATCTGTCCCAGTTGACCCAAGCCTACTGGTGGCAGGCC
GTGCTGGCGCTCGTGGTGATGATCCTCGGCGTGCGCCAGGCCATGAAGCGCTCGCCGGCATTTGCCTATCGTGCCCATCA
GCTGGCGCTCAAGCTGCCGGTGATCGGCAATATCATCGACAAGGGCTCGATCGCCCGCTTCTCGCGCACGCTCGCGACCA
CGTTCAACGCCGGCATTCCGCTGGTCGAGGCGCTCGATACCGCCGCCGGCGCCACCGGCAACCAGGTTCATCAGCGCGCC
ATTGCCGAGATTCGCGAAGACGTCGCCACGGGGCAGCAGCTCAACTTCGCCATGCGTCGCACCAAGGTCTTCCCGATAAT
GGCCGTGCAGATGGTCAGCATCGGCGAGGAAGCCGGCGAACTGGACACAATGCTGGACAAGGTGGCGGAGTTCTACGAGG
AAGAAGTCGATAATCAGGTCGACACGCTGACCTCTCTGCTGGAGCCGTTCATTCTGGTGGTGCTCGGCACCATGGTCGGT
GGATTGGTGGTGTCGATGTATCTACCAATCTTCCAGATGGGTTCCGCTATATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2D8V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

51.372

96.163

0.494
  pilC Acinetobacter baylyi ADP1

50.873

96.163

0.489
  pilC Pseudomonas stutzeri DSM 10701

50.38

94.724

0.477
  pilC Legionella pneumophila strain ERS1305867

47.317

98.321

0.465
  pilC Vibrio cholerae strain A1552

46.078

97.842

0.451
  pilC Vibrio campbellii strain DS40M4

43.609

95.683

0.417
  pilG Neisseria gonorrhoeae MS11

41.667

94.964

0.396
  pilG Neisseria meningitidis 44/76-A

41.927

92.086

0.386