Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R5R73_RS07910 Genome accession   NZ_CP140261
Coordinates   1696564..1697424 (-) Length   286 a.a.
NCBI ID   WP_322529369.1    Uniprot ID   -
Organism   Salinicola sp. LHM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1691564..1702424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5R73_RS07890 (R5R73_07890) argJ 1693096..1694304 (+) 1209 WP_322529366.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  R5R73_RS07895 (R5R73_07895) - 1694402..1695355 (+) 954 WP_071232858.1 Nudix family hydrolase -
  R5R73_RS07900 (R5R73_07900) yacG 1695591..1695869 (-) 279 WP_322529367.1 DNA gyrase inhibitor YacG -
  R5R73_RS07905 (R5R73_07905) coaE 1695914..1696567 (-) 654 WP_322529368.1 dephospho-CoA kinase -
  R5R73_RS07910 (R5R73_07910) pilD 1696564..1697424 (-) 861 WP_322529369.1 A24 family peptidase Machinery gene
  R5R73_RS07915 (R5R73_07915) pilC 1697658..1698911 (-) 1254 WP_071232856.1 type II secretion system F family protein Machinery gene
  R5R73_RS07920 (R5R73_07920) pilB 1699027..1700754 (-) 1728 WP_322529370.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R5R73_RS07925 (R5R73_07925) - 1701209..1701736 (+) 528 WP_322529371.1 pilin -
  R5R73_RS07930 (R5R73_07930) - 1701857..1702141 (-) 285 WP_322529372.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 30907.01 Da        Isoelectric Point: 7.6157

>NTDB_id=913312 R5R73_RS07910 WP_322529369.1 1696564..1697424(-) (pilD) [Salinicola sp. LHM]
MSDLLPLLVWPLAFLFGAALGSFLNVVIVRLPVMLMQRWRAEALEALEQPVEAGPAYNLATPRSHCPGCGHFIAWHDNLP
LVGWLKRRGRCAACGTAISVQYPLIELVSALLTVAIMALHGVSWQSLWLVGACLCLLALAVIDWRTQLLPDALTLPLLWA
GLLYQWLFAPLMLESAVLGAVAGYLSLWSVYWLFKLATGKEGMGYGDFKLMAALGAWLGWQSLPLLLLLSAGVGAVAGLI
LIALRQQDRNQAMPFGPYIALAGWIALLIGAPLLAGYQALLLGGWG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=913312 R5R73_RS07910 WP_322529369.1 1696564..1697424(-) (pilD) [Salinicola sp. LHM]
TTGTCCGATCTTCTCCCTTTGCTTGTCTGGCCGCTGGCGTTCCTGTTCGGCGCGGCCCTGGGCAGTTTCTTGAACGTCGT
TATCGTGCGGCTGCCGGTAATGCTGATGCAGCGCTGGCGGGCCGAGGCGCTGGAAGCGCTGGAGCAGCCGGTGGAAGCCG
GCCCTGCCTACAATCTGGCGACGCCACGTTCGCACTGCCCCGGCTGCGGGCACTTCATCGCCTGGCATGACAATCTGCCG
CTGGTCGGCTGGCTCAAGCGTCGCGGCCGCTGTGCCGCATGCGGTACGGCGATCAGTGTCCAGTATCCGCTGATCGAGCT
GGTTTCGGCATTGCTGACGGTGGCGATCATGGCGCTGCATGGCGTGAGCTGGCAAAGCCTGTGGCTGGTCGGCGCCTGCC
TCTGCCTGCTGGCACTGGCAGTGATCGACTGGCGAACCCAGCTGCTGCCGGATGCGCTGACCCTGCCGCTACTCTGGGCC
GGCCTGCTCTATCAGTGGCTGTTCGCGCCATTGATGCTGGAAAGCGCCGTGCTGGGCGCCGTCGCCGGGTATCTGTCACT
GTGGTCGGTCTACTGGCTCTTCAAGCTGGCGACCGGCAAGGAAGGCATGGGCTACGGGGATTTCAAGCTGATGGCGGCAC
TCGGCGCCTGGCTCGGCTGGCAGAGCCTGCCGCTGCTGCTGTTGCTCTCGGCGGGCGTGGGCGCCGTGGCCGGCCTGATA
CTGATCGCCCTGCGCCAGCAGGATCGCAACCAGGCAATGCCCTTCGGCCCCTATATCGCCCTGGCCGGATGGATCGCCCT
GCTGATCGGCGCCCCGCTGTTGGCCGGCTATCAGGCGCTGTTACTGGGAGGCTGGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-117)

Type IV leader peptidase family (Peptidase_A24)

(133-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.399

94.755

0.497
  pilD Vibrio campbellii strain DS40M4

49.466

98.252

0.486
  pilD Acinetobacter nosocomialis M2

44.912

99.65

0.448
  pilD Acinetobacter baumannii D1279779

44.561

99.65

0.444
  pilD Neisseria gonorrhoeae MS11

44.981

94.056

0.423