Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SR908_RS01780 Genome accession   NZ_CP140151
Coordinates   361346..362578 (+) Length   410 a.a.
NCBI ID   WP_097022957.1    Uniprot ID   A0A285VNA4
Organism   Chromohalobacter canadensis strain ATCC 43984     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 356346..367578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR908_RS01760 (SR908_01760) - 356452..357933 (-) 1482 WP_322527379.1 TrkH family potassium uptake protein -
  SR908_RS01765 (SR908_01765) - 358197..358484 (+) 288 WP_097022954.1 hypothetical protein -
  SR908_RS01770 (SR908_01770) - 358759..359226 (-) 468 WP_281504880.1 pilin -
  SR908_RS01775 (SR908_01775) pilB 359571..361313 (+) 1743 WP_246922884.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SR908_RS01780 (SR908_01780) pilC 361346..362578 (+) 1233 WP_097022957.1 type II secretion system F family protein Machinery gene
  SR908_RS01785 (SR908_01785) - 362649..363491 (+) 843 WP_378075243.1 prepilin peptidase -
  SR908_RS01790 (SR908_01790) coaE 363502..364140 (+) 639 WP_246922887.1 dephospho-CoA kinase -
  SR908_RS01795 (SR908_01795) yacG 364142..364375 (+) 234 WP_040241746.1 DNA gyrase inhibitor YacG -
  SR908_RS01800 (SR908_01800) - 364448..365392 (-) 945 WP_097023116.1 Nudix family hydrolase -
  SR908_RS01805 (SR908_01805) argJ 365499..366707 (-) 1209 WP_246922890.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45355.87 Da        Isoelectric Point: 10.4913

>NTDB_id=913055 SR908_RS01780 WP_097022957.1 361346..362578(+) (pilC) [Chromohalobacter canadensis strain ATCC 43984]
MAVATRSKAPRRVVLHRWRWKGKNSRGETIQGELVAADEMGVRQELGRQNILVKRIQRVRSPFGLGRIRPQDITLFARQM
ATMIRAGIPLLQAFSVVSESLKRPAMHHLIETLMNEVSAGASFSEALSQHPRHFDRMFVNMVEAGEQSGSLDRMLERVAS
YKEKIDSLRSRVRKALYYPAAVVLVGMGVTALLLIKVVPQFESLFRGFGADLPAFTQLTIHLSEWVQAYWPHLLGAFIAA
GVLIRLGIRRSPRFAYRVDGLMLRLPVIGDILDKSSVARFSRTLATTFSAGVPLVESLHTAAGSTGNRVYQRAIDEVREH
VASGQQLNFAMRATGRFPNLAVQMIGVGEESGALDAMLNKVADFYEDDVDTKVDALTSLLEPFIIVVLGVLVGGLVVSMY
LPIFEMGSAI

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=913055 SR908_RS01780 WP_097022957.1 361346..362578(+) (pilC) [Chromohalobacter canadensis strain ATCC 43984]
ATGGCGGTAGCGACACGCAGCAAGGCGCCTCGGCGCGTCGTCCTGCACCGCTGGCGGTGGAAGGGCAAGAACTCCCGCGG
TGAAACCATCCAAGGCGAACTGGTCGCCGCGGATGAAATGGGCGTGCGCCAGGAACTCGGACGTCAGAACATCCTCGTCA
AGCGGATTCAGCGCGTGCGCAGCCCTTTCGGGCTGGGTCGCATACGCCCGCAGGACATCACCCTGTTCGCACGCCAGATG
GCGACCATGATTCGTGCCGGCATTCCCTTGCTGCAGGCGTTCAGTGTCGTGTCGGAAAGCCTCAAGCGCCCCGCCATGCA
TCATCTCATCGAGACGTTGATGAACGAGGTCTCGGCAGGCGCCAGCTTTTCCGAAGCGCTCTCACAGCATCCGCGACATT
TCGATCGCATGTTCGTCAACATGGTCGAAGCCGGCGAACAATCCGGCTCGCTGGATCGAATGCTAGAGCGTGTCGCCAGC
TACAAGGAAAAGATAGACTCGCTGCGCTCCCGCGTGCGCAAGGCGCTTTATTACCCCGCCGCTGTCGTGCTCGTGGGCAT
GGGGGTGACCGCCCTGCTGCTGATCAAGGTCGTACCGCAATTCGAGAGCCTGTTTCGCGGCTTCGGCGCCGACCTGCCCG
CCTTCACGCAATTGACCATCCACCTCTCGGAGTGGGTCCAAGCCTACTGGCCGCACCTGCTTGGCGCCTTCATCGCTGCC
GGCGTGCTGATACGTCTCGGTATACGGCGTTCGCCGCGCTTCGCCTATCGCGTCGATGGGCTGATGCTGCGCCTCCCGGT
GATCGGCGATATTCTCGACAAGTCGTCGGTGGCACGCTTCTCGCGGACCCTGGCGACGACCTTCAGCGCCGGGGTGCCCT
TGGTAGAATCACTGCATACTGCGGCAGGCTCGACCGGTAACCGCGTCTACCAGCGTGCCATCGACGAGGTACGTGAACAC
GTCGCCAGTGGCCAGCAACTCAACTTCGCCATGCGCGCCACCGGGCGCTTTCCCAATCTGGCCGTGCAGATGATCGGGGT
CGGCGAAGAGTCCGGCGCACTGGACGCGATGCTCAACAAGGTCGCGGATTTCTACGAGGATGACGTCGACACCAAGGTCG
ACGCCCTGACATCGTTGCTCGAACCCTTCATCATCGTGGTGCTGGGCGTTCTGGTCGGCGGCCTCGTGGTGTCGATGTAT
CTGCCGATTTTCGAGATGGGCTCGGCAATCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A285VNA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.658

96.341

0.507
  pilC Acinetobacter baylyi ADP1

49.144

99.756

0.49
  pilC Legionella pneumophila strain ERS1305867

49.875

97.805

0.488
  pilC Acinetobacter baumannii D1279779

48.111

96.829

0.466
  pilC Vibrio cholerae strain A1552

44.39

100

0.444
  pilC Vibrio campbellii strain DS40M4

44.118

99.512

0.439
  pilG Neisseria meningitidis 44/76-A

40.806

96.829

0.395
  pilG Neisseria gonorrhoeae MS11

40.806

96.829

0.395
  pilC Thermus thermophilus HB27

37

97.561

0.361