Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   U0037_RS04000 Genome accession   NZ_CP140009
Coordinates   890886..892094 (-) Length   402 a.a.
NCBI ID   WP_043204767.1    Uniprot ID   -
Organism   Pseudomonas marginalis strain SBW25     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885886..897094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0037_RS03960 (U0037_03960) - 885908..887206 (-) 1299 WP_012722153.1 NAD(P)/FAD-dependent oxidoreductase -
  U0037_RS03965 (U0037_03965) - 887267..887440 (-) 174 WP_012722154.1 DUF3094 family protein -
  U0037_RS03970 (U0037_03970) - 887495..888124 (-) 630 WP_010213242.1 DUF1780 domain-containing protein -
  U0037_RS03975 (U0037_03975) - 888229..888918 (+) 690 WP_012722155.1 energy-coupling factor ABC transporter permease -
  U0037_RS03980 (U0037_03980) - 888994..889209 (+) 216 WP_012722156.1 hypothetical protein -
  U0037_RS03985 (U0037_03985) yacG 889206..889406 (-) 201 WP_012722157.1 DNA gyrase inhibitor YacG -
  U0037_RS03990 (U0037_03990) coaE 889403..890026 (-) 624 WP_012722158.1 dephospho-CoA kinase -
  U0037_RS03995 (U0037_03995) pilD 890023..890889 (-) 867 WP_012722159.1 prepilin peptidase Machinery gene
  U0037_RS04000 (U0037_04000) pilC 890886..892094 (-) 1209 WP_043204767.1 type II secretion system F family protein Machinery gene
  U0037_RS04005 (U0037_04005) - 892297..892710 (+) 414 WP_043206123.1 pilin -
  U0037_RS04010 (U0037_04010) - 892747..894147 (+) 1401 WP_012722162.1 O-antigen ligase family protein -
  U0037_RS04020 (U0037_04020) - 894428..894733 (+) 306 WP_012722163.1 DUF6388 family protein -
  U0037_RS04025 (U0037_04025) nadC 895748..896596 (-) 849 WP_012722164.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43195.50 Da        Isoelectric Point: 10.0946

>NTDB_id=912424 U0037_RS04000 WP_043204767.1 890886..892094(-) (pilC) [Pseudomonas marginalis strain SBW25]
MDNAATIYAWEGINRKGRRVSGQTTGHNLALVKAQLRRQGISPGAVHKKSALLPSLAPSIKSADITLLTRQLATLLKAGI
PLLQAFDIIGEGFESRPVRELVQGLKQAIAAGTSLAEALRKQPRYFDELYCNLVAAGEQAGALETLLERVAIHREKSEQL
RARIKKAMTYPIAVLVVASLVTGVLLIQVVPQFQSLFAGVDGKLPEFTLQVIALSEFTQKAWWVVALGMLAGGLGWRQAY
RTFPDFRLRVDAGLLKAPLAGKLLKKSAVARYARTLSTTFAAGVPLVQALDSVAGAAGSGPFRQAIEHMRHDVSTGMQLN
QSMAASGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDNLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGS
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=912424 U0037_RS04000 WP_043204767.1 890886..892094(-) (pilC) [Pseudomonas marginalis strain SBW25]
ATGGACAACGCTGCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTCCGGGCAAACCACGGGGCA
CAACCTTGCCCTGGTCAAGGCTCAGTTGCGCCGGCAAGGCATCAGCCCAGGGGCTGTGCACAAGAAATCCGCCTTGCTAC
CGAGCCTCGCGCCGTCGATCAAATCGGCGGACATCACCCTGCTAACTCGACAGCTGGCCACGCTGCTGAAGGCTGGAATC
CCACTTCTACAAGCCTTCGACATTATCGGTGAAGGCTTCGAAAGCCGCCCTGTGCGCGAGCTGGTGCAGGGGTTGAAACA
GGCAATCGCCGCCGGCACCAGCCTGGCCGAGGCGCTGCGCAAACAACCGCGCTATTTCGATGAGCTGTACTGCAACCTGG
TGGCCGCCGGCGAACAGGCTGGCGCACTTGAAACGCTGCTGGAGCGCGTGGCGATCCACCGCGAAAAGAGCGAGCAGCTA
CGGGCCAGGATCAAAAAGGCCATGACCTATCCGATCGCAGTCCTGGTGGTCGCCAGCCTGGTCACCGGCGTGCTGCTGAT
ACAGGTAGTGCCACAGTTCCAGAGTTTGTTCGCCGGGGTCGACGGCAAGCTGCCCGAGTTTACCTTGCAGGTCATCGCCC
TCTCCGAGTTCACGCAAAAAGCCTGGTGGGTCGTGGCCCTGGGCATGCTTGCCGGAGGCTTGGGGTGGCGCCAAGCGTAT
CGCACCTTCCCTGATTTTCGTCTGCGGGTAGACGCCGGTTTGTTGAAAGCGCCCCTGGCAGGCAAACTGCTGAAAAAATC
CGCAGTGGCCCGCTACGCCCGTACGCTTTCCACCACCTTCGCCGCCGGTGTTCCATTGGTGCAGGCGCTGGATTCAGTGG
CCGGCGCCGCAGGGTCGGGGCCATTCAGACAGGCAATCGAGCACATGCGACATGATGTATCCACCGGTATGCAATTGAAT
CAATCCATGGCCGCCAGCGGCCTGTTTCCCGGCATGGCGATCCAGATGACGGCCATCGGCGAAGAGTCGGGCACGTTGGA
CCGCATGCTGGAAAAAGTCGCCAACCATTACGAGGCTGATGTGGACAACCTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTATTGGGGGGCATCGTCGGCGCGCTGGTGATCGCCATGTACCTGCCGGTCTTTCAGTTGGGGAGC
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.747

98.259

0.587
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

50.38

98.259

0.495
  pilC Legionella pneumophila strain ERS1305867

49.747

98.507

0.49
  pilC Vibrio cholerae strain A1552

41.667

98.507

0.41
  pilG Neisseria gonorrhoeae MS11

40.42

94.776

0.383
  pilC Vibrio campbellii strain DS40M4

39.086

98.01

0.383
  pilG Neisseria meningitidis 44/76-A

39.633

94.776

0.376
  pilC Thermus thermophilus HB27

37.406

99.751

0.373