Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U0447_RS01955 Genome accession   NZ_CP139861
Coordinates   379845..380315 (-) Length   156 a.a.
NCBI ID   WP_000609605.1    Uniprot ID   A0AAX3HEU5
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374845..385315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS01925 - 375420..376355 (-) 936 WP_000036043.1 manganese-dependent inorganic pyrophosphatase -
  U0447_RS01930 - 376426..376725 (-) 300 WP_000349601.1 GIY-YIG nuclease family protein -
  U0447_RS01935 - 376715..377464 (-) 750 WP_000390783.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U0447_RS01940 - 377518..377877 (-) 360 WP_000689596.1 S1 RNA-binding domain-containing protein -
  U0447_RS01945 - 377879..379279 (-) 1401 WP_000339024.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  U0447_RS01950 rpsR 379574..379813 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  U0447_RS01955 ssbA 379845..380315 (-) 471 WP_000609605.1 single-stranded DNA-binding protein SsbA Machinery gene
  U0447_RS01960 rpsF 380327..380617 (-) 291 WP_001151785.1 30S ribosomal protein S6 -
  U0447_RS01965 asnS 380770..382113 (-) 1344 WP_000167152.1 asparagine--tRNA ligase -
  U0447_RS01970 - 382132..382497 (-) 366 Protein_387 VOC family protein -
  U0447_RS01975 - 382490..383677 (-) 1188 WP_000777789.1 pyridoxal phosphate-dependent aminotransferase -
  U0447_RS01980 - 383674..384162 (-) 489 WP_000747253.1 DUF5590 domain-containing protein -
  U0447_RS01985 - 384483..385031 (+) 549 WP_000039617.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17367.26 Da        Isoelectric Point: 5.2065

>NTDB_id=911384 U0447_RS01955 WP_000609605.1 379845..380315(-) (ssbA) [Streptococcus pneumoniae strain 16H2017-2]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVLDFSRNENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=911384 U0447_RS01955 WP_000609605.1 379845..380315(-) (ssbA) [Streptococcus pneumoniae strain 16H2017-2]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGTGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCACACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCACCTACAAATTCAGTACTAGACT
TTTCACGTAATGAAAATCCATTTGGAGCAACAAACCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.615
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

69.872

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae Rx1

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae D39

52.294

69.872

0.365
  ssbB/cilA Streptococcus pneumoniae R6

52.294

69.872

0.365
  ssbB/cilA Streptococcus mitis SK321

52.294

69.872

0.365