Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SOM08_RS04655 Genome accession   NZ_CP139793
Coordinates   955307..956524 (-) Length   405 a.a.
NCBI ID   WP_322470131.1    Uniprot ID   -
Organism   Hydrogenophaga sp. SNF1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 950307..961524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOM08_RS04625 (SOM08_04625) - 951497..952381 (+) 885 WP_116958341.1 ATP-binding protein -
  SOM08_RS04630 (SOM08_04630) - 952378..952827 (+) 450 WP_116958340.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  SOM08_RS04635 (SOM08_04635) - 952841..953041 (-) 201 WP_116958339.1 DNA gyrase inhibitor YacG -
  SOM08_RS04640 (SOM08_04640) zapD 953046..953801 (-) 756 WP_322470688.1 cell division protein ZapD -
  SOM08_RS04645 (SOM08_04645) coaE 953845..954453 (-) 609 WP_116958338.1 dephospho-CoA kinase -
  SOM08_RS04650 (SOM08_04650) pilD 954450..955307 (-) 858 WP_116958337.1 prepilin peptidase Machinery gene
  SOM08_RS04655 (SOM08_04655) pilC 955307..956524 (-) 1218 WP_322470131.1 type II secretion system F family protein Machinery gene
  SOM08_RS04660 (SOM08_04660) pilB 956559..958289 (-) 1731 WP_322470132.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SOM08_RS04670 (SOM08_04670) - 958592..959521 (-) 930 WP_245980887.1 polyprenyl synthetase family protein -
  SOM08_RS04675 (SOM08_04675) rplU 959803..960114 (+) 312 WP_070399112.1 50S ribosomal protein L21 -
  SOM08_RS04680 (SOM08_04680) rpmA 960127..960384 (+) 258 WP_070399111.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44407.09 Da        Isoelectric Point: 9.3635

>NTDB_id=911041 SOM08_RS04655 WP_322470131.1 955307..956524(-) (pilC) [Hydrogenophaga sp. SNF1]
MATVARKSVKDFVFEWEGKDRNGKAVRGETRAQGENQVTATLRRQGIIPIKIKKRRTSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNPNPNVTRLLNDIRADVETGTSLSAAFRKHPMYFDSLYCNLIEAGEAAGILEDLLDRLATYMEKT
EALKSKIKSALMYPTAVIIVAFVVVAVIMIFVIPSFKEVFTSFGADLPAPTLFVIAMSEFFVQYWWLIFGGLGGGLYFFL
QAWKRNEKVQRFMDRVLLKLPIFGELIEKSVVARWTRTLATMFGAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTAAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=911041 SOM08_RS04655 WP_322470131.1 955307..956524(-) (pilC) [Hydrogenophaga sp. SNF1]
ATGGCCACCGTCGCAAGAAAGAGCGTCAAGGACTTCGTGTTCGAATGGGAGGGCAAAGACCGCAACGGCAAGGCGGTGCG
CGGGGAAACGCGCGCCCAGGGTGAAAACCAGGTGACGGCCACGCTGCGCCGGCAAGGCATCATCCCGATCAAGATCAAGA
AGCGCCGCACGTCTTCGGGCAAGCGCATCAAGCCGAAGGACATCGCGATCTTCACGCGCCAGTTGGCCACCATGATGAAG
GCCGGCGTGCCACTGCTGCAGTCCTTCGACATCGTGGGTCGCGGCAACCCCAACCCCAACGTCACGCGGCTGCTCAACGA
CATTCGCGCCGACGTGGAAACCGGTACCTCGCTGAGCGCGGCCTTCCGCAAGCACCCGATGTACTTCGACAGCCTCTACT
GCAACCTGATCGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTCGACCGCCTCGCCACCTACATGGAGAAGACC
GAGGCGCTGAAGTCGAAGATCAAGTCGGCCCTCATGTACCCCACGGCCGTGATCATCGTGGCCTTCGTGGTGGTGGCCGT
CATCATGATTTTTGTGATCCCCTCCTTCAAGGAGGTGTTCACCTCGTTTGGCGCCGACCTGCCCGCGCCCACGCTGTTCG
TCATCGCCATGAGCGAGTTCTTCGTCCAGTACTGGTGGCTCATCTTCGGTGGCCTCGGCGGCGGCCTCTACTTCTTCCTG
CAGGCCTGGAAGCGCAACGAAAAGGTCCAGCGATTCATGGACCGCGTGCTGCTCAAGCTGCCCATCTTCGGCGAGCTGAT
CGAGAAATCGGTGGTGGCGCGCTGGACACGCACGCTGGCCACCATGTTCGGCGCGGGCGTGCCGCTGGTGGAAGCGCTCG
ATTCCGTGGGTGGCGCCTCGGGCAACTCGGTCTATGCCATCGCCACCGAAAAGATCCAGCAGGAGGTGTCGACCGGCACC
AGCCTCACGGCCGCGATGACCAACGCGAACATCTTTCCCTCGATGGTGCTGCAGATGTGCGCGATCGGCGAAGAATCAGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTACGAGGCCGAGGTCGACGACATGGTGGCCGGCATCTCCAGCC
TGATGGAGCCGATCATCATCGTCGTACTCGGCACAGTGATCGGCGGCATCGTCGTCTCGATGTACCTGCCCATCTTCAAG
CTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.074

100

0.541
  pilG Neisseria gonorrhoeae MS11

52.632

98.519

0.519
  pilG Neisseria meningitidis 44/76-A

52.381

98.519

0.516
  pilC Acinetobacter baylyi ADP1

50.251

98.272

0.494
  pilC Legionella pneumophila strain ERS1305867

50

97.778

0.489
  pilC Acinetobacter baumannii D1279779

48.615

98.025

0.477
  pilC Vibrio cholerae strain A1552

41.562

98.025

0.407
  pilC Vibrio campbellii strain DS40M4

40.796

99.259

0.405
  pilC Thermus thermophilus HB27

37.349

100

0.383