Detailed information NTG0911040

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SOM08_RS04650
• Genome accession: NZ_CP139793
• Coordinates: 954450..955307 (-)
• Length: 285 a.a.
• NCBI ID: WP_116958337.1
• Uniprot ID: -
• Organism: Hydrogenophaga sp. SNF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 949450..960307

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOM08_RS04620 (SOM08_04620)	argJ	950253..951500 (+)	1248	WP_116958342.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
SOM08_RS04625 (SOM08_04625)	-	951497..952381 (+)	885	WP_116958341.1	ATP-binding protein	-
SOM08_RS04630 (SOM08_04630)	-	952378..952827 (+)	450	WP_116958340.1	(deoxy)nucleoside triphosphate pyrophosphohydrolase	-
SOM08_RS04635 (SOM08_04635)	-	952841..953041 (-)	201	WP_116958339.1	DNA gyrase inhibitor YacG	-
SOM08_RS04640 (SOM08_04640)	zapD	953046..953801 (-)	756	WP_322470688.1	cell division protein ZapD	-
SOM08_RS04645 (SOM08_04645)	coaE	953845..954453 (-)	609	WP_116958338.1	dephospho-CoA kinase	-
SOM08_RS04650 (SOM08_04650)	pilD	954450..955307 (-)	858	WP_116958337.1	prepilin peptidase	Machinery gene
SOM08_RS04655 (SOM08_04655)	pilC	955307..956524 (-)	1218	WP_322470131.1	type II secretion system F family protein	Machinery gene
SOM08_RS04660 (SOM08_04660)	pilB	956559..958289 (-)	1731	WP_322470132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOM08_RS04670 (SOM08_04670)	-	958592..959521 (-)	930	WP_245980887.1	polyprenyl synthetase family protein	-
SOM08_RS04675 (SOM08_04675)	rplU	959803..960114 (+)	312	WP_070399112.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 29960.29 Da
• Isoelectric Point: 7.2566

>NTDB_id=911040 SOM08_RS04650 WP_116958337.1 954450..955307(-) (pilD) [Hydrogenophaga sp. SNF1]
MAELATGAPAAALLGVLGLLVGSFLNVVIHRLPKMMERQWAAECAELQGTARDAQAPADRYNLLVPRSACPHCGHAIRWY
ENIPVLSYLALRGRCSQCGAGIGPRYPLVEAATGALFAWAGWHWGLNAAGLAWCGFAAAVVALACIDWDTTLLPDDITLP
LLWTGLVAAALGVTPTHLADAVWGAVGGYLSLWLVYWAFKLLTGKEGMGYGDFKLFAAFGAWFGWQALVPIILMASVIGA
VVGIGIKLVGRLREGGYVPFGPFLALGGLTAMVFGPSAILAAVGL

Nucleotide

• Length: 858 bp

>NTDB_id=911040 SOM08_RS04650 WP_116958337.1 954450..955307(-) (pilD) [Hydrogenophaga sp. SNF1]
ATGGCGGAATTGGCCACCGGTGCGCCCGCCGCGGCGCTGTTGGGCGTGCTCGGCCTGCTCGTGGGCAGTTTCCTGAACGT
CGTCATCCACCGCCTGCCCAAGATGATGGAGCGGCAATGGGCCGCCGAATGCGCGGAGTTGCAGGGCACGGCGCGAGACG
CCCAGGCACCGGCAGACCGCTACAACCTCCTGGTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACGCCATCCGTTGGTAC
GAGAACATCCCCGTGCTGAGCTACCTCGCGCTGCGTGGCCGGTGCAGCCAGTGCGGCGCGGGCATCGGGCCGCGCTATCC
CCTGGTGGAAGCCGCCACCGGTGCGTTGTTCGCCTGGGCAGGCTGGCACTGGGGCCTCAACGCCGCCGGCCTGGCCTGGT
GTGGGTTCGCCGCGGCCGTGGTCGCGCTGGCCTGCATCGACTGGGACACCACCCTGCTGCCCGACGACATCACGCTGCCC
CTGCTGTGGACGGGCCTGGTCGCCGCGGCACTCGGCGTCACGCCCACCCACCTGGCCGATGCCGTCTGGGGGGCGGTCGG
CGGCTACCTGTCCTTGTGGCTCGTCTACTGGGCCTTCAAGCTGCTCACCGGCAAGGAGGGGATGGGCTACGGCGACTTCA
AGCTGTTCGCGGCCTTCGGCGCCTGGTTCGGCTGGCAAGCGCTGGTGCCCATCATCCTCATGGCCTCGGTGATCGGCGCG
GTCGTCGGCATTGGCATCAAGCTGGTGGGCCGCCTGCGCGAAGGCGGCTATGTGCCCTTCGGCCCCTTCCTCGCGTTGGG
CGGGCTCACCGCCATGGTGTTCGGTCCCTCGGCCATCCTGGCCGCCGTCGGCCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (16-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.685	93.684	0.484
pilD	Vibrio campbellii strain DS40M4	50.57	92.281	0.467
pilD	Neisseria gonorrhoeae MS11	47.253	95.789	0.453
pilD	Acinetobacter baumannii D1279779	41.912	95.439	0.4
pilD	Acinetobacter nosocomialis M2	40.809	95.439	0.389