Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCU43_RS05310 Genome accession   NZ_AP025284
Coordinates   1185054..1186283 (-) Length   409 a.a.
NCBI ID   WP_091362100.1    Uniprot ID   A0A1H9M390
Organism   Amphritea atlantica strain JCM 14776     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1180054..1191283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU43_RS05285 argJ 1180458..1181675 (+) 1218 WP_091362096.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  OCU43_RS05290 - 1181706..1182635 (+) 930 WP_175483622.1 Nudix family hydrolase -
  OCU43_RS05295 yacG 1183197..1183451 (-) 255 WP_175483623.1 DNA gyrase inhibitor YacG -
  OCU43_RS05300 coaE 1183444..1184061 (-) 618 WP_091362098.1 dephospho-CoA kinase -
  OCU43_RS05305 pilD 1184117..1185016 (-) 900 WP_091362099.1 A24 family peptidase Machinery gene
  OCU43_RS05310 pilC 1185054..1186283 (-) 1230 WP_091362100.1 type II secretion system F family protein Machinery gene
  OCU43_RS05315 pilB 1186348..1188066 (-) 1719 WP_091362101.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCU43_RS05320 - 1188494..1188919 (+) 426 WP_091362102.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCU43_RS05325 - 1189058..1189417 (+) 360 WP_091362103.1 hypothetical protein -
  OCU43_RS05330 nadC 1189839..1190684 (-) 846 WP_091362104.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44567.34 Da        Isoelectric Point: 9.9090

>NTDB_id=91039 OCU43_RS05310 WP_091362100.1 1185054..1186283(-) (pilC) [Amphritea atlantica strain JCM 14776]
MAKKAANKTPLTFNWEGKDKSGNASKGAINAENLAEAKAMLRKQGIMPKKVRKQSYSMFSNHNKPIKPLDIALFTRQTAT
MLKSGVPLLQGFDIVANGIEKQKMKQVIYDLKADVSGGTNFAKALERHPKYFDDLYCNLVHAGESSGSLETMLDRIATYK
EKMETLKKKIKKALTYPIAVIVIGLVVSAILLIKVVPQFESVFSSFGADLPAFTMFVVHLSKIAQDWWFIALIAIAVAGF
SFAKAHEKSRGFREWLDRTVLKLPIVGKILHNSAIARFARTLATTFAAGVPLVDALDSAAGASGNVVYEKAIMQIKNGVS
TGQSLQNAVTMTGLFPAMATQMIAIGEEAGSLEMMLDKVASYYEEEVDNAVDNLSTLIEPMIMAILGILVGGLVIAMYLP
IFQLGNVVH

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=91039 OCU43_RS05310 WP_091362100.1 1185054..1186283(-) (pilC) [Amphritea atlantica strain JCM 14776]
ATGGCTAAGAAAGCAGCAAACAAAACGCCTCTCACCTTTAACTGGGAAGGTAAAGATAAGAGCGGTAATGCCAGCAAAGG
GGCGATCAACGCTGAAAACCTCGCTGAAGCCAAAGCGATGCTGCGCAAACAGGGTATTATGCCCAAAAAGGTTCGTAAAC
AGAGCTACAGCATGTTCAGCAACCATAACAAACCGATAAAACCGCTGGACATCGCCCTGTTTACCCGCCAGACCGCCACC
ATGCTGAAGTCCGGGGTGCCACTACTGCAGGGCTTCGATATCGTTGCTAACGGTATCGAAAAACAGAAGATGAAACAGGT
GATATACGATCTGAAAGCCGATGTCAGTGGCGGCACCAACTTTGCCAAAGCCCTGGAACGCCATCCAAAATATTTTGATG
ATTTGTACTGCAACCTGGTCCATGCCGGTGAAAGTTCCGGCTCGCTGGAAACCATGCTTGACCGGATCGCTACCTATAAA
GAAAAAATGGAGACTCTTAAAAAGAAGATCAAAAAAGCCCTGACCTATCCCATTGCGGTAATTGTCATCGGTCTGGTAGT
GTCCGCCATTCTTTTGATCAAGGTAGTCCCCCAGTTTGAAAGTGTATTCTCCAGCTTCGGTGCCGACCTGCCCGCCTTCA
CTATGTTTGTTGTGCATCTGTCGAAAATTGCCCAGGACTGGTGGTTTATCGCACTGATCGCGATTGCGGTCGCCGGTTTC
TCATTTGCCAAAGCTCATGAAAAATCTCGGGGGTTCCGGGAGTGGCTCGATCGCACGGTACTGAAACTACCCATTGTCGG
GAAGATACTGCATAACTCCGCTATTGCACGGTTTGCCCGAACCCTGGCCACCACCTTTGCCGCTGGTGTCCCGCTGGTCG
ATGCGCTGGATTCTGCGGCGGGCGCTTCCGGGAATGTAGTCTATGAAAAGGCGATTATGCAGATCAAGAACGGCGTTTCT
ACCGGACAATCACTGCAAAACGCCGTCACCATGACCGGACTGTTTCCAGCGATGGCTACCCAGATGATCGCCATCGGCGA
AGAGGCGGGCTCCCTTGAGATGATGCTGGATAAGGTTGCCAGTTACTATGAGGAGGAGGTGGATAACGCCGTCGATAACC
TCTCTACGCTGATCGAGCCGATGATTATGGCGATTCTGGGTATTCTGGTGGGCGGTCTGGTTATCGCCATGTATCTGCCA
ATCTTCCAGTTGGGTAATGTCGTACACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H9M390

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.804

99.756

0.597
  pilC Acinetobacter baylyi ADP1

57.213

100

0.572
  pilC Acinetobacter baumannii D1279779

56.724

100

0.567
  pilC Legionella pneumophila strain ERS1305867

56.576

98.533

0.557
  pilC Vibrio cholerae strain A1552

42.857

99.267

0.425
  pilG Neisseria meningitidis 44/76-A

43.577

97.066

0.423
  pilG Neisseria gonorrhoeae MS11

43.577

97.066

0.423
  pilC Vibrio campbellii strain DS40M4

41.855

97.555

0.408

Multiple sequence alignment