Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | AABJ85_RS09390 | Genome accession | NZ_AP027854 |
| Coordinates | 1918129..1919139 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568519.1 | Uniprot ID | Q32HA1 |
| Organism | Escherichia coli strain 2017-19-1CC | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1913129..1924139
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AABJ85_RS09350 (VEE77_18160) | nudB | 1914077..1914529 (+) | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| AABJ85_RS09355 (VEE77_18170) | yebC | 1914558..1915298 (+) | 741 | WP_000907248.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AABJ85_RS09360 (VEE77_18180) | ruvC | 1915333..1915854 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| AABJ85_RS09365 | - | 1915856..1916383 (-) | 528 | Protein_1826 | YebB family permuted papain-like enzyme | - |
| AABJ85_RS09370 (VEE77_18210) | - | 1916438..1917135 (+) | 698 | WP_223367350.1 | IS1 family transposase | - |
| AABJ85_RS09375 | - | 1917145..1917234 (-) | 90 | Protein_1828 | hypothetical protein | - |
| AABJ85_RS09380 | yobI | 1917305..1917370 (+) | 66 | WP_010723105.1 | stress response small protein YobI | - |
| AABJ85_RS09385 (VEE77_18220) | ruvA | 1917509..1918120 (+) | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| AABJ85_RS09390 (VEE77_18230) | ruvB | 1918129..1919139 (+) | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| AABJ85_RS09395 (VEE77_18240) | znuB | 1919286..1920071 (-) | 786 | WP_000571479.1 | zinc ABC transporter permease subunit ZnuB | - |
| AABJ85_RS09400 (VEE77_18250) | znuC | 1920068..1920823 (-) | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| AABJ85_RS09405 (VEE77_18260) | znuA | 1920902..1921834 (+) | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| AABJ85_RS09410 (VEE77_18270) | mepM | 1921850..1923172 (+) | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37173.77 Da Isoelectric Point: 4.7818
>NTDB_id=91039 AABJ85_RS09390 WP_000568519.1 1918129..1919139(+) (ruvB) [Escherichia coli strain 2017-19-1CC]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMP
Nucleotide
Download Length: 1011 bp
>NTDB_id=91039 AABJ85_RS09390 WP_000568519.1 1918129..1919139(+) (ruvB) [Escherichia coli strain 2017-19-1CC]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCCAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGACCTGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTAGCAGATCGCGCCATTCGCCCCAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCACAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATTTGTTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAACATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATTTGGCTGCGATGCTCACTAACCTTGAACCGCA
TGACGTGCTGTTTATTGATGAGATCCACCGTCTATCGCCAGTTGTTGAAGAAGTGCTGTACCCGGCAATGGAAGACTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGACCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGCGCTCGCGGTACGCCGCGCATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGTGGACCTGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTGCTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGCCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
53.251 |
96.131 |
0.512 |
| ruvB | Helicobacter pylori 26695 |
52.038 |
94.94 |
0.494 |