Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PCI15_RS06640 Genome accession   NZ_AP025281
Coordinates   1457088..1458314 (-) Length   408 a.a.
NCBI ID   WP_271273549.1    Uniprot ID   -
Organism   Aliamphritea hakodatensis strain PT3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1452088..1463314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCI15_RS06615 argJ 1453145..1454362 (+) 1218 WP_271273545.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  PCI15_RS06620 - 1454378..1455310 (+) 933 WP_271273546.1 Nudix family hydrolase -
  PCI15_RS06625 - 1455354..1455581 (-) 228 WP_336296733.1 DNA gyrase inhibitor YacG -
  PCI15_RS06630 coaE 1455598..1456194 (-) 597 WP_271273547.1 dephospho-CoA kinase -
  PCI15_RS06635 pilD 1456197..1457063 (-) 867 WP_271273548.1 A24 family peptidase Machinery gene
  PCI15_RS06640 pilC 1457088..1458314 (-) 1227 WP_271273549.1 type II secretion system F family protein Machinery gene
  PCI15_RS06645 pilB 1458335..1460053 (-) 1719 WP_271273550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PCI15_RS06650 - 1460340..1460759 (+) 420 WP_271273551.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PCI15_RS06655 - 1460844..1461269 (+) 426 WP_271273552.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PCI15_RS06660 - 1461331..1461681 (+) 351 WP_271273553.1 hypothetical protein -
  PCI15_RS06665 nadC 1461755..1462606 (-) 852 WP_271273554.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44330.36 Da        Isoelectric Point: 10.2022

>NTDB_id=90993 PCI15_RS06640 WP_271273549.1 1457088..1458314(-) (pilC) [Aliamphritea hakodatensis strain PT3]
MAIKKKEKLPTTFIWEGKDKTGNPSKGTIDAENLTIAKAQLRRQGLLPRKVRKQTSSVFSKASKPIKPLDIALFTRQMAT
MLKSGVPLLQGFDIVSNGIEKIQLKKVINELKNDVNSGTSFAKALEKHPKYFDELFCNLVQAGEQSGSLETMLDRIATYK
EKIESLKAKIKKAMTYPIAVIVIGVIVSAILLIKVVPQFESVFQSFGAELPAFTQFVVGLSVVAREWWFIALLAIIVSGY
LFQKSMQSSAKLRASVDRAVLKLPIIGKILHNSAIARFARTLSTTFAAGVPLVNALESAAGASGNIVYSTAIMQIKNGVS
TGQSLKNAVNMTGLFPPMATQMIAIGEEAGSLDMMLDKIANFYEEEVDNAVDNLSSLIEPMIMAILGILVGGLVIAMYLP
IFQLGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=90993 PCI15_RS06640 WP_271273549.1 1457088..1458314(-) (pilC) [Aliamphritea hakodatensis strain PT3]
ATGGCCATTAAAAAGAAAGAAAAATTACCTACTACCTTTATATGGGAAGGCAAAGATAAAACCGGCAACCCCAGTAAAGG
AACAATAGATGCTGAAAACCTGACCATTGCCAAGGCCCAGTTACGCCGTCAGGGCTTACTTCCCAGAAAGGTACGAAAAC
AAACCAGCAGCGTTTTCAGCAAGGCCTCCAAGCCAATAAAACCATTAGACATTGCCCTTTTTACCCGCCAAATGGCCACA
ATGCTTAAATCCGGTGTTCCACTGCTGCAAGGATTTGATATCGTCTCGAACGGCATTGAAAAAATACAACTAAAAAAAGT
CATCAATGAGCTGAAAAATGACGTTAACAGCGGCACCAGCTTTGCCAAAGCACTGGAGAAACACCCAAAGTACTTTGATG
AATTATTCTGCAATCTGGTTCAGGCGGGCGAACAGTCTGGCTCACTTGAGACCATGCTTGACCGGATCGCCACCTACAAA
GAAAAAATTGAATCCCTGAAAGCTAAAATTAAAAAAGCCATGACCTATCCCATCGCCGTTATTGTGATCGGGGTCATTGT
ATCTGCCATTTTGCTCATTAAGGTGGTTCCGCAGTTCGAAAGTGTTTTCCAGTCTTTTGGGGCTGAACTGCCCGCCTTCA
CCCAGTTCGTTGTGGGACTTTCCGTGGTGGCCCGCGAATGGTGGTTCATTGCCTTGTTAGCAATAATTGTCTCAGGTTAT
CTGTTCCAAAAATCGATGCAAAGCTCAGCGAAGCTTCGAGCGTCCGTTGACCGCGCGGTACTGAAACTGCCCATCATCGG
GAAAATCCTGCATAACTCAGCCATCGCCCGGTTTGCCAGAACCCTTTCTACCACCTTTGCTGCGGGCGTCCCATTAGTTA
ATGCCCTGGAATCAGCGGCAGGTGCTTCGGGCAATATTGTCTATTCAACGGCCATCATGCAGATTAAAAATGGCGTTTCT
ACCGGTCAGTCTTTAAAAAACGCCGTAAATATGACCGGGCTGTTTCCGCCGATGGCCACACAGATGATTGCAATCGGCGA
AGAAGCAGGCTCTTTAGATATGATGCTCGATAAAATTGCTAATTTCTACGAGGAAGAAGTTGATAATGCCGTGGATAATC
TGTCCAGCCTGATCGAACCCATGATCATGGCAATATTAGGTATCCTGGTAGGTGGACTGGTTATCGCCATGTACCTGCCA
ATTTTCCAACTTGGCTCAGTTATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.05

97.549

0.586
  pilC Acinetobacter baylyi ADP1

55.257

100

0.554
  pilC Acinetobacter baumannii D1279779

54.279

100

0.544
  pilC Legionella pneumophila strain ERS1305867

55.668

97.304

0.542
  pilG Neisseria meningitidis 44/76-A

42.611

99.51

0.424
  pilG Neisseria gonorrhoeae MS11

42.611

99.51

0.424
  pilC Vibrio cholerae strain A1552

40.342

100

0.404
  pilC Vibrio campbellii strain DS40M4

41.353

97.794

0.404

Multiple sequence alignment