Detailed information NTG0090992

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PCI15_RS06635
• Genome accession: NZ_AP025281
• Coordinates: 1456197..1457063 (-)
• Length: 288 a.a.
• NCBI ID: WP_271273548.1
• Uniprot ID: -
• Organism: Aliamphritea hakodatensis strain PT3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1451197..1462063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCI15_RS06615	argJ	1453145..1454362 (+)	1218	WP_271273545.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
PCI15_RS06620	-	1454378..1455310 (+)	933	WP_271273546.1	Nudix family hydrolase	-
PCI15_RS06625	-	1455354..1455581 (-)	228	WP_336296733.1	DNA gyrase inhibitor YacG	-
PCI15_RS06630	coaE	1455598..1456194 (-)	597	WP_271273547.1	dephospho-CoA kinase	-
PCI15_RS06635	pilD	1456197..1457063 (-)	867	WP_271273548.1	A24 family peptidase	Machinery gene
PCI15_RS06640	pilC	1457088..1458314 (-)	1227	WP_271273549.1	type II secretion system F family protein	Machinery gene
PCI15_RS06645	pilB	1458335..1460053 (-)	1719	WP_271273550.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PCI15_RS06650	-	1460340..1460759 (+)	420	WP_271273551.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PCI15_RS06655	-	1460844..1461269 (+)	426	WP_271273552.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PCI15_RS06660	-	1461331..1461681 (+)	351	WP_271273553.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32345.45 Da
• Isoelectric Point: 5.6254

>NTDB_id=90992 PCI15_RS06635 WP_271273548.1 1456197..1457063(-) (pilD) [Aliamphritea hakodatensis strain PT3]
MIIEYIAATPWFSISITLIFSLCVGSFLNVVIYRLPVMMEREWEEQIAELNESTEATPTDKFNLSVPASACPNCQHKIRW
YENIPVLSYLFLKGACSSCKIKISLRYPFIELTTGLLSACIVYQFGFNLVSLSLVFLTWCLICLTMIDVDHQLLPDKITL
PLIWLGLIVNSFDYFTSLPQALWGAVLGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWAGASMLPLIILLSSLVGA
VLGITMILLRRHEAQNPIPFGPYLACAGWIAMLWGSEITGFYLHFLQV

Nucleotide

• Length: 867 bp

>NTDB_id=90992 PCI15_RS06635 WP_271273548.1 1456197..1457063(-) (pilD) [Aliamphritea hakodatensis strain PT3]
ATGATTATTGAATACATTGCAGCCACTCCCTGGTTTTCTATTTCTATTACCCTTATTTTTTCGCTGTGTGTAGGTAGCTT
CCTCAACGTAGTGATTTATCGCCTGCCAGTGATGATGGAACGGGAGTGGGAAGAACAGATAGCTGAATTAAATGAAAGCA
CTGAAGCCACGCCAACTGATAAATTTAACCTGAGCGTACCCGCTTCTGCCTGCCCGAATTGTCAGCACAAGATTCGCTGG
TATGAGAATATACCTGTTCTCAGCTACCTGTTTTTAAAAGGGGCCTGCTCGTCCTGTAAAATAAAGATATCACTCCGGTA
CCCGTTTATTGAGCTGACAACAGGATTACTCAGCGCCTGTATCGTCTACCAGTTTGGTTTTAATCTGGTCAGCCTGTCAC
TGGTCTTTTTAACCTGGTGCCTGATCTGCCTGACTATGATTGACGTTGACCACCAGCTACTGCCGGATAAGATCACCCTG
CCGCTGATCTGGCTGGGTTTAATCGTGAACAGTTTTGATTATTTTACCTCACTGCCACAGGCCCTTTGGGGGGCAGTACT
TGGCTACCTGTCCCTGTGGAGCATTTACTGGCTATTTAAATTACTGACCGGCAAAGAAGGCATGGGATACGGCGACTTCA
AGTTGCTTGCTGCACTGGGTGCCTGGGCAGGTGCCAGCATGCTGCCGCTGATTATCCTGCTTTCCTCACTGGTCGGCGCT
GTGCTTGGAATAACCATGATCCTGTTGCGCCGGCATGAGGCTCAGAACCCGATTCCTTTTGGGCCTTACCTCGCCTGTGC
CGGGTGGATCGCAATGCTTTGGGGCAGTGAAATAACCGGTTTTTATTTACACTTCCTTCAGGTATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	55.351	94.097	0.521
pilD	Acinetobacter nosocomialis M2	55.351	94.097	0.521
pilD	Vibrio cholerae strain A1552	53.455	95.486	0.51
pilD	Vibrio campbellii strain DS40M4	50.53	98.264	0.497
pilD	Neisseria gonorrhoeae MS11	52.107	90.625	0.472