Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SM121_RS08430 Genome accession   NZ_CP139418
Coordinates   1728605..1729273 (-) Length   222 a.a.
NCBI ID   WP_320910850.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1723605..1734273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS08410 (SM121_08410) sodA 1723948..1724553 (-) 606 WP_003006336.1 superoxide dismutase SodA -
  SM121_RS08415 (SM121_08415) holA 1724642..1725676 (-) 1035 WP_320910847.1 DNA polymerase III subunit delta -
  SM121_RS08420 (SM121_08420) - 1725700..1726302 (-) 603 WP_320910848.1 DUF805 domain-containing protein -
  SM121_RS08425 (SM121_08425) comEC/celB 1726378..1728624 (-) 2247 WP_320910849.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SM121_RS08430 (SM121_08430) comEA/celA/cilE 1728605..1729273 (-) 669 WP_320910850.1 helix-hairpin-helix domain-containing protein Machinery gene
  SM121_RS08435 (SM121_08435) - 1729340..1730086 (-) 747 WP_320910851.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  SM121_RS08440 (SM121_08440) - 1730262..1732601 (+) 2340 WP_320910852.1 cation-translocating P-type ATPase -
  SM121_RS08445 (SM121_08445) - 1732682..1733428 (+) 747 WP_049514084.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SM121_RS08450 (SM121_08450) - 1733418..1733681 (+) 264 WP_004219743.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23831.61 Da        Isoelectric Point: 4.9978

>NTDB_id=909502 SM121_RS08430 WP_320910850.1 1728605..1729273(-) (comEA/celA/cilE) [Streptococcus dentalis strain S1]
MEDIIEKIKEYKLFLALTAIGLLLGGYFLFHRPQSSASTIPDFYQSSSSTSSKEKVQTTSSKEEKTTTSVSDAPEIITVD
VKGAVKQPGVYELRSDSRVHDAIHKAGGMTADANSQSVNLAQKLSDEAVIYVAKEGEDVPALGSSESPATSSAPAEKTGK
VNLNRATETELQTVSGIGQKRAQDIIAYREANGPFRSVDDLKNVSGIGEKTLEKLKDAFTVD

Nucleotide


Download         Length: 669 bp        

>NTDB_id=909502 SM121_RS08430 WP_320910850.1 1728605..1729273(-) (comEA/celA/cilE) [Streptococcus dentalis strain S1]
ATGGAGGATATCATCGAAAAAATCAAAGAATATAAGCTCTTTTTAGCTCTTACTGCTATCGGACTCTTACTTGGAGGGTA
TTTTCTTTTTCATCGACCCCAGTCAAGTGCATCCACCATACCGGATTTTTATCAGTCTTCTAGTTCAACTTCGAGCAAAG
AAAAGGTGCAGACCACTAGTTCCAAAGAAGAAAAGACGACTACTTCTGTGTCTGATGCACCCGAGATCATTACGGTCGAT
GTCAAAGGAGCCGTCAAACAACCAGGTGTCTATGAGTTGCGCTCAGATAGCAGAGTCCACGATGCCATTCATAAGGCGGG
TGGGATGACAGCAGATGCCAATAGCCAATCAGTCAACTTGGCGCAAAAACTCTCCGATGAAGCAGTGATCTATGTTGCTA
AAGAAGGAGAGGATGTTCCAGCACTTGGAAGTTCAGAAAGTCCTGCAACTTCGTCAGCGCCAGCAGAAAAAACAGGCAAG
GTTAATTTAAATCGAGCGACAGAGACAGAGCTCCAGACCGTATCGGGCATTGGCCAGAAACGTGCCCAGGACATTATCGC
CTATCGCGAGGCAAATGGTCCTTTTCGATCAGTGGATGATCTGAAGAATGTTTCAGGAATCGGAGAGAAAACACTGGAGA
AACTAAAAGATGCTTTCACGGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(79-132)

Helix-hairpin-helix motif (HHH_3)

(158-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.