Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NCY62_RS16540 Genome accession   NZ_CP139356
Coordinates   3455535..3456761 (+) Length   408 a.a.
NCBI ID   WP_002114869.1    Uniprot ID   A0A009NCN6
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3450535..3461761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS16505 (NCY62_16560) rimP 3451206..3451730 (-) 525 WP_002114922.1 ribosome maturation factor RimP -
  NCY62_RS16525 (NCY62_16580) secG 3452368..3452697 (-) 330 WP_017398731.1 preprotein translocase subunit SecG -
  NCY62_RS16530 (NCY62_16585) tpiA 3452710..3453504 (-) 795 WP_005079338.1 triose-phosphate isomerase -
  NCY62_RS16535 (NCY62_16590) pilB 3453796..3455508 (+) 1713 WP_032038056.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NCY62_RS16540 (NCY62_16595) pilC 3455535..3456761 (+) 1227 WP_002114869.1 type II secretion system F family protein Machinery gene
  NCY62_RS16545 (NCY62_16600) pilD 3456761..3457621 (+) 861 WP_032070754.1 prepilin peptidase Machinery gene
  NCY62_RS16550 (NCY62_16605) coaE 3457623..3458219 (+) 597 WP_032070755.1 dephospho-CoA kinase -
  NCY62_RS16555 (NCY62_16610) - 3458216..3459130 (-) 915 WP_250733696.1 DMT family transporter -
  NCY62_RS16560 (NCY62_16615) rlmB 3459166..3459915 (-) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NCY62_RS16565 (NCY62_16620) - 3460018..3460344 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  NCY62_RS16570 (NCY62_16625) - 3460421..3461731 (-) 1311 WP_250733694.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45041.48 Da        Isoelectric Point: 9.8207

>NTDB_id=909090 NCY62_RS16540 WP_002114869.1 3455535..3456761(+) (pilC) [Acinetobacter pittii strain A45P]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=909090 NCY62_RS16540 WP_002114869.1 3455535..3456761(+) (pilC) [Acinetobacter pittii strain A45P]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGCGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAAGTTGAAGGCGGTAGTACCTTTGCTTCAGCTTTAAGGAAGTATCCTCAACATTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGATCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCTTTTCTGGAAGCCAAGAAGCGCAGTAAAAAATTCCGTGATGGATTAGATAAACTTACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACTGGTCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCGCTAGACAGCATGCTCGATAAAGTTGCTACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCGTAGGTGGTCTAGTGATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NCN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365