NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NCY62_RS16545	Genome accession	NZ_CP139356
Coordinates	3456761..3457621 (+)	Length	286 a.a.
NCBI ID	WP_032070754.1	Uniprot ID	A0AAE9M8Y4
Organism	Acinetobacter pittii strain A45P
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3451761..3462621

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCY62_RS16525 (NCY62_16580)	secG	3452368..3452697 (-)	330	WP_017398731.1	preprotein translocase subunit SecG	-
NCY62_RS16530 (NCY62_16585)	tpiA	3452710..3453504 (-)	795	WP_005079338.1	triose-phosphate isomerase	-
NCY62_RS16535 (NCY62_16590)	pilB	3453796..3455508 (+)	1713	WP_032038056.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NCY62_RS16540 (NCY62_16595)	pilC	3455535..3456761 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
NCY62_RS16545 (NCY62_16600)	pilD	3456761..3457621 (+)	861	WP_032070754.1	prepilin peptidase	Machinery gene
NCY62_RS16550 (NCY62_16605)	coaE	3457623..3458219 (+)	597	WP_032070755.1	dephospho-CoA kinase	-
NCY62_RS16555 (NCY62_16610)	-	3458216..3459130 (-)	915	WP_250733696.1	DMT family transporter	-
NCY62_RS16560 (NCY62_16615)	rlmB	3459166..3459915 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NCY62_RS16565 (NCY62_16620)	-	3460018..3460344 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
NCY62_RS16570 (NCY62_16625)	-	3460421..3461731 (-)	1311	WP_250733694.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32128.61 Da Isoelectric Point: 6.4261

                                >NTDB_id=909091 NCY62_RS16545 WP_032070754.1 3456761..3457621(+) (pilD) [Acinetobacter pittii strain A45P]

MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPELPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGDCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=909091 NCY62_RS16545 WP_032070754.1 3456761..3457621(+) (pilD) [Acinetobacter pittii strain A45P]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG

TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATATTGCTTA

ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCGATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG

ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG

GCGACTTTAAATTGCTTGCCGCATTAGGGGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437

Detailed information NTG0909091