Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SOI71_RS16805 Genome accession   NZ_CP139251
Coordinates   3541982..3543208 (+) Length   408 a.a.
NCBI ID   WP_063098007.1    Uniprot ID   A0AB33BK57
Organism   Acinetobacter pittii strain MCR53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3536982..3548208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI71_RS16770 (SOI71_16760) rimP 3537653..3538177 (-) 525 WP_104075062.1 ribosome maturation factor RimP -
  SOI71_RS16790 (SOI71_16780) secG 3538815..3539144 (-) 330 WP_002115012.1 preprotein translocase subunit SecG -
  SOI71_RS16795 (SOI71_16785) tpiA 3539157..3539951 (-) 795 WP_046812055.1 triose-phosphate isomerase -
  SOI71_RS16800 (SOI71_16790) pilB 3540243..3541955 (+) 1713 WP_104075063.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SOI71_RS16805 (SOI71_16795) pilC 3541982..3543208 (+) 1227 WP_063098007.1 type II secretion system F family protein Machinery gene
  SOI71_RS16810 (SOI71_16800) pilD 3543208..3544068 (+) 861 WP_063098006.1 prepilin peptidase Machinery gene
  SOI71_RS16815 (SOI71_16805) coaE 3544070..3544666 (+) 597 WP_063098005.1 dephospho-CoA kinase -
  SOI71_RS16820 (SOI71_16810) - 3544663..3545577 (-) 915 WP_104075064.1 DMT family transporter -
  SOI71_RS16825 (SOI71_16815) rlmB 3545613..3546362 (-) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SOI71_RS16830 (SOI71_16820) - 3546465..3546791 (-) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  SOI71_RS16835 (SOI71_16825) - 3546868..3548178 (-) 1311 WP_104075065.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45013.42 Da        Isoelectric Point: 9.8207

>NTDB_id=908349 SOI71_RS16805 WP_063098007.1 3541982..3543208(+) (pilC) [Acinetobacter pittii strain MCR53]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=908349 SOI71_RS16805 WP_063098007.1 3541982..3543208(+) (pilC) [Acinetobacter pittii strain MCR53]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAGGGTTTATTCAAGAAGAAAGTATCAACACTCGATATCACAATTTTTACTAGGCAACTTGCAACG
ATGATGAAAGCAGGTGTGCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAGGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTATTTTCTTCTTTTGGTGCTGATTTACCAGCATTCA
CCCAAATGGTCGTGAACATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGGGCAATTATTGCC
GCATTTCTGGAAGCCAAGAAGCGTAGTAAAAAATTCCGTGATGGCTTAGACAAACTCACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAATAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTCCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTTGTGGGTGGTCTGGTTGTTGCTATGTATCTTCCA
ATTTTTCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365