NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	SOI71_RS16810	Genome accession	NZ_CP139251
Coordinates	3543208..3544068 (+)	Length	286 a.a.
NCBI ID	WP_063098006.1	Uniprot ID	A0AB33B799
Organism	Acinetobacter pittii strain MCR53
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3538208..3549068

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SOI71_RS16790 (SOI71_16780)	secG	3538815..3539144 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
SOI71_RS16795 (SOI71_16785)	tpiA	3539157..3539951 (-)	795	WP_046812055.1	triose-phosphate isomerase	-
SOI71_RS16800 (SOI71_16790)	pilB	3540243..3541955 (+)	1713	WP_104075063.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SOI71_RS16805 (SOI71_16795)	pilC	3541982..3543208 (+)	1227	WP_063098007.1	type II secretion system F family protein	Machinery gene
SOI71_RS16810 (SOI71_16800)	pilD	3543208..3544068 (+)	861	WP_063098006.1	prepilin peptidase	Machinery gene
SOI71_RS16815 (SOI71_16805)	coaE	3544070..3544666 (+)	597	WP_063098005.1	dephospho-CoA kinase	-
SOI71_RS16820 (SOI71_16810)	-	3544663..3545577 (-)	915	WP_104075064.1	DMT family transporter	-
SOI71_RS16825 (SOI71_16815)	rlmB	3545613..3546362 (-)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SOI71_RS16830 (SOI71_16820)	-	3546465..3546791 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
SOI71_RS16835 (SOI71_16825)	-	3546868..3548178 (-)	1311	WP_104075065.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32225.75 Da Isoelectric Point: 7.1044

                                >NTDB_id=908350 SOI71_RS16810 WP_063098006.1 3543208..3544068(+) (pilD) [Acinetobacter pittii strain MCR53]

MQEIIAYFIQNLTALYIVVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTLQMLWGLMLTWILIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYIIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=908350 SOI71_RS16810 WP_063098006.1 3543208..3544068(+) (pilD) [Acinetobacter pittii strain MCR53]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGTAGTTGCACTATTAAGCCTATGTATTGG

TAGTTTTTTGAATGTAGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA

ATCCCGAGCAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG

CATTCGTTATCCAGCGATTGAATTACTCACAATGCTATGTTCATTAGTAGTCGTCATCGTTTTTGGTCCAACCCTACAAA

TGCTTTGGGGGCTAATGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT

TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCACCCAACTCAGCCATTTGGGG

CTATATCATCGGTTTTCTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG

GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA

CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT

TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Acinetobacter nosocomialis M2	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434

Detailed information NTG0908350