Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SJN48_RS01695 Genome accession   NZ_CP139212
Coordinates   359877..360359 (+) Length   160 a.a.
NCBI ID   WP_130121773.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354877..365359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01685 (SJN48_01690) pilX 355191..356000 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SJN48_RS01690 (SJN48_01695) pilY1 356012..359866 (+) 3855 WP_407324050.1 PilC/PilY family type IV pilus protein Machinery gene
  SJN48_RS01695 (SJN48_01700) pilY2 359877..360359 (+) 483 WP_130121773.1 type IV pilin protein Machinery gene
  SJN48_RS01700 (SJN48_01705) pilE 360356..360781 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SJN48_RS01705 (SJN48_01710) rpsP 360929..361180 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SJN48_RS01710 (SJN48_01715) rimM 361200..361748 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SJN48_RS01715 (SJN48_01720) trmD 361791..362546 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SJN48_RS01720 (SJN48_01725) rplS 362766..363134 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SJN48_RS01725 (SJN48_01730) lip 363186..364127 (-) 942 WP_014207808.1 alpha/beta fold hydrolase -
  SJN48_RS01730 (SJN48_01735) - 364243..365274 (-) 1032 WP_130121771.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17564.81 Da        Isoelectric Point: 8.4721

>NTDB_id=908103 SJN48_RS01695 WP_130121773.1 359877..360359(+) (pilY2) [Acinetobacter pittii strain WWTP]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCAGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908103 SJN48_RS01695 WP_130121773.1 359877..360359(+) (pilY2) [Acinetobacter pittii strain WWTP]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCGACGGCTTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACCACCACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGCTGCCAAAGTT
TAACAGCTACAGCTGTTGATAATGACTGTGCTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45