Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   SJN48_RS02050 Genome accession   NZ_CP139212
Coordinates   430682..431311 (-) Length   209 a.a.
NCBI ID   WP_130121713.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425682..436311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS02015 (SJN48_02020) mlaE 426015..426791 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  SJN48_RS02020 (SJN48_02025) - 426791..427471 (+) 681 WP_005067241.1 outer membrane lipid asymmetry maintenance protein MlaD -
  SJN48_RS02025 (SJN48_02030) - 427498..428139 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  SJN48_RS02030 (SJN48_02035) - 428151..428438 (+) 288 WP_005078357.1 lipid asymmetry maintenance protein MlaB -
  SJN48_RS02035 (SJN48_02040) - 428511..429524 (-) 1014 WP_005078356.1 magnesium and cobalt transport protein CorA -
  SJN48_RS02040 (SJN48_02045) - 429683..430264 (+) 582 WP_005067248.1 TIGR00730 family Rossman fold protein -
  SJN48_RS02045 (SJN48_02050) mutT 430279..430680 (+) 402 WP_033848810.1 NUDIX domain-containing protein -
  SJN48_RS02050 (SJN48_02055) comF 430682..431311 (-) 630 WP_130121713.1 ComF family protein Machinery gene
  SJN48_RS02055 (SJN48_02060) recG 431304..433349 (-) 2046 WP_046811835.1 ATP-dependent DNA helicase RecG -
  SJN48_RS02060 (SJN48_02065) - 433370..434185 (+) 816 WP_130121711.1 NAD-dependent epimerase/dehydratase family protein -
  SJN48_RS02065 (SJN48_02070) - 434265..435248 (+) 984 WP_025468463.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24489.61 Da        Isoelectric Point: 9.9656

>NTDB_id=908105 SJN48_RS02050 WP_130121713.1 430682..431311(-) (comF) [Acinetobacter pittii strain WWTP]
MFNFLNFQHLIQLFSPCSLCELGTREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACNYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSRHLKIPVWQPIQRLNEHSQKGLTRLERFENIEQQFLPH
HQEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908105 SJN48_RS02050 WP_130121713.1 430682..431311(-) (comF) [Acinetobacter pittii strain WWTP]
ATGTTTAATTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCACGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTCCTTG
TAGCCTGTAATTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAGTTACATTATCAAATCTTA
TTAGGTGAAATTTTAAAACAATTAAAATTTCCCAAGGTACAAGCTATTGTACCTATGCCTATTTCCAATCAACGTTTAAT
TGAACGTGGTTTCAATCAGTCATTATTACTTGCCAATATCTTAAGCAGACACTTAAAAATACCTGTTTGGCAACCAATCC
AACGCTTAAATGAGCACTCTCAAAAAGGGCTTACTCGGCTAGAACGCTTTGAAAATATAGAACAACAATTTTTACCTCAT
CATCAAGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACCACAGGAAGCTCCGTTCATGCGCTCAG
TCAGGCACTTAAACAATTAGGCTGCACATCCATTCATACGGCGTGCCTAGCAGCGACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833