Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SJN48_RS01700 Genome accession   NZ_CP139212
Coordinates   360356..360781 (+) Length   141 a.a.
NCBI ID   WP_014207809.1    Uniprot ID   A0AAN4MGD4
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355356..365781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01690 (SJN48_01695) pilY1 356012..359866 (+) 3855 WP_407324050.1 PilC/PilY family type IV pilus protein Machinery gene
  SJN48_RS01695 (SJN48_01700) pilY2 359877..360359 (+) 483 WP_130121773.1 type IV pilin protein Machinery gene
  SJN48_RS01700 (SJN48_01705) pilE 360356..360781 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene
  SJN48_RS01705 (SJN48_01710) rpsP 360929..361180 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SJN48_RS01710 (SJN48_01715) rimM 361200..361748 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SJN48_RS01715 (SJN48_01720) trmD 361791..362546 (+) 756 WP_005067137.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SJN48_RS01720 (SJN48_01725) rplS 362766..363134 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SJN48_RS01725 (SJN48_01730) lip 363186..364127 (-) 942 WP_014207808.1 alpha/beta fold hydrolase -
  SJN48_RS01730 (SJN48_01735) - 364243..365274 (-) 1032 WP_130121771.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15188.33 Da        Isoelectric Point: 7.1292

>NTDB_id=908104 SJN48_RS01700 WP_014207809.1 360356..360781(+) (pilE) [Acinetobacter pittii strain WWTP]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATITSIYGSSVSPQQG
QALYNLAFSSITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=908104 SJN48_RS01700 WP_014207809.1 360356..360781(+) (pilE) [Acinetobacter pittii strain WWTP]
ATGAAGAATGGTTTTACCTTAATAGAACTCATGATTGTAGTAGCAATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
GTATTTGCAGTATTTACGCAAAGGGCATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACGATTACTTCGATTTATGGATCTAGTGTCAGCCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTTTCTAGCATAACTGATTCAAGCTGGGTGCTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.816

100

0.858
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511