Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   TM2_RS08340 Genome accession   NZ_AP025262
Coordinates   1645771..1647021 (+) Length   416 a.a.
NCBI ID   WP_007499480.1    Uniprot ID   -
Organism   Bacillus altitudinis strain TM2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1640771..1652021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TM2_RS08315 (TM2_15920) ymfI 1642182..1642910 (+) 729 WP_046526665.1 elongation factor P 5-aminopentanone reductase -
  TM2_RS08320 (TM2_15930) - 1642984..1643241 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  TM2_RS08325 (TM2_15940) - 1643373..1644164 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  TM2_RS08330 (TM2_15950) - 1644188..1645099 (+) 912 WP_072367246.1 helix-turn-helix domain-containing protein -
  TM2_RS08335 (TM2_15960) pgsA 1645173..1645754 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  TM2_RS08340 (TM2_15970) cinA 1645771..1647021 (+) 1251 WP_007499480.1 competence/damage-inducible protein A Machinery gene
  TM2_RS08345 (TM2_15980) recA 1647199..1648242 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  TM2_RS08350 (TM2_15990) rny 1648543..1650105 (+) 1563 WP_113747382.1 ribonuclease Y -
  TM2_RS08355 (TM2_16000) - 1650195..1650989 (+) 795 WP_008344680.1 TIGR00282 family metallophosphoesterase -
  TM2_RS08360 (TM2_16010) spoVS 1651192..1651452 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45628.76 Da        Isoelectric Point: 4.8653

>NTDB_id=90761 TM2_RS08340 WP_007499480.1 1645771..1647021(+) (cinA) [Bacillus altitudinis strain TM2]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=90761 TM2_RS08340 WP_007499480.1 1645771..1647021(+) (cinA) [Bacillus altitudinis strain TM2]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGTAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAATACTT
CCGTAAAACCGGACGTGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGTTCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTTGGCCTAAAGGAAAAAATCGTGTCTGTAGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAACTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCGTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAAGGACAGCCGGTTGGAAAAGTAT
TTATCGGTCTATCGACAAAAGACCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.847

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.608

100

0.478
  cinA Streptococcus pneumoniae Rx1

47.368

100

0.476
  cinA Streptococcus pneumoniae R6

47.368

100

0.476
  cinA Streptococcus pneumoniae D39

47.129

100

0.474
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394

Multiple sequence alignment