Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SGW63_RS11150 Genome accession   NZ_CP138670
Coordinates   2258537..2258932 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain DA70500     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2253537..2263932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGW63_RS11120 - 2254795..2255199 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  SGW63_RS11125 - 2255537..2255629 (+) 93 WP_001790611.1 hypothetical protein -
  SGW63_RS11130 - 2255761..2255994 (+) 234 WP_000384523.1 DUF1146 family protein -
  SGW63_RS11135 murA 2256105..2257370 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SGW63_RS11140 fabZ 2257404..2257844 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  SGW63_RS11145 - 2257903..2258343 (-) 441 WP_000846746.1 YwpF-like family protein -
  SGW63_RS11150 ssb 2258537..2258932 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  SGW63_RS11155 sceD 2259321..2260016 (+) 696 WP_000752001.1 lytic transglycosylase SceD -
  SGW63_RS11160 tenA 2260541..2261230 (+) 690 WP_000396074.1 thiaminase II -
  SGW63_RS11165 thiD 2261223..2262053 (+) 831 WP_000594942.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  SGW63_RS11170 thiM 2262037..2262828 (+) 792 WP_001108478.1 hydroxyethylthiazole kinase -
  SGW63_RS11175 thiE 2262830..2263471 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=904472 SGW63_RS11150 WP_000932694.1 2258537..2258932(+) (ssb) [Staphylococcus aureus strain DA70500]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=904472 SGW63_RS11150 WP_000932694.1 2258537..2258932(+) (ssb) [Staphylococcus aureus strain DA70500]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992