Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SHT66_RS01945 | Genome accession | NZ_CP138637 |
| Coordinates | 379259..379717 (+) | Length | 152 a.a. |
| NCBI ID | WP_002365911.1 | Uniprot ID | Q8VT46 |
| Organism | Enterococcus faecalis strain ES-3-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 370847..429994 | 379259..379717 | within | 0 |
Gene organization within MGE regions
Location: 370847..429994
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SHT66_RS01880 (SHT66_01880) | prgU | 371400..371756 (+) | 357 | WP_010714280.1 | pheromone response system RNA-binding regulator PrgU | - |
| SHT66_RS01885 (SHT66_01885) | - | 371778..372164 (+) | 387 | WP_002377929.1 | hypothetical protein | - |
| SHT66_RS01890 (SHT66_01890) | - | 372310..372570 (+) | 261 | WP_002370667.1 | hypothetical protein | - |
| SHT66_RS01895 (SHT66_01895) | - | 372581..373459 (+) | 879 | WP_002377931.1 | hypothetical protein | - |
| SHT66_RS01900 (SHT66_01900) | - | 373479..374339 (+) | 861 | WP_010710128.1 | LPXTG cell wall anchor domain-containing protein | - |
| SHT66_RS01905 (SHT66_01905) | - | 374365..375635 (+) | 1271 | Protein_351 | CHAP domain-containing protein | - |
| SHT66_RS01910 (SHT66_01910) | - | 375638..376255 (+) | 618 | WP_002377936.1 | hypothetical protein | - |
| SHT66_RS01915 (SHT66_01915) | - | 376239..376655 (+) | 417 | WP_002401419.1 | thioredoxin domain-containing protein | - |
| SHT66_RS01920 (SHT66_01920) | - | 376655..376969 (+) | 315 | WP_002360796.1 | hypothetical protein | - |
| SHT66_RS01925 (SHT66_01925) | - | 376962..377996 (+) | 1035 | WP_002403100.1 | conjugal transfer protein | - |
| SHT66_RS01930 (SHT66_01930) | - | 378001..378261 (+) | 261 | WP_010706916.1 | hypothetical protein | - |
| SHT66_RS01935 (SHT66_01935) | - | 378261..378650 (+) | 390 | WP_002360791.1 | TcpE family conjugal transfer membrane protein | - |
| SHT66_RS01940 (SHT66_01940) | - | 378682..379164 (+) | 483 | WP_002377938.1 | hypothetical protein | - |
| SHT66_RS01945 (SHT66_01945) | ssb | 379259..379717 (+) | 459 | WP_002365911.1 | single-stranded DNA-binding protein | Machinery gene |
| SHT66_RS01950 (SHT66_01950) | - | 379822..382314 (+) | 2493 | WP_002377939.1 | ATP-binding protein | - |
| SHT66_RS01955 (SHT66_01955) | - | 382271..382669 (+) | 399 | WP_002370287.1 | lipocalin-like domain-containing protein | - |
| SHT66_RS01960 (SHT66_01960) | - | 382682..385027 (+) | 2346 | WP_002377940.1 | CD3337/EF1877 family mobilome membrane protein | - |
| SHT66_RS01965 (SHT66_01965) | - | 385014..387272 (+) | 2259 | WP_010710132.1 | type IV secretory system conjugative DNA transfer family protein | - |
| SHT66_RS01970 (SHT66_01970) | - | 387795..388580 (+) | 786 | WP_002360778.1 | replication-relaxation family protein | - |
| SHT66_RS01975 (SHT66_01975) | - | 388586..389074 (+) | 489 | WP_010710133.1 | hypothetical protein | - |
| SHT66_RS01980 (SHT66_01980) | - | 389666..389932 (+) | 267 | WP_002377947.1 | hypothetical protein | - |
| SHT66_RS01985 (SHT66_01985) | - | 389965..390465 (+) | 501 | WP_002360775.1 | DnaJ domain-containing protein | - |
| SHT66_RS01990 (SHT66_01990) | - | 390478..390726 (+) | 249 | WP_002360773.1 | DUF3850 domain-containing protein | - |
| SHT66_RS01995 (SHT66_01995) | - | 390802..391218 (+) | 417 | WP_010710134.1 | single-stranded DNA-binding protein | - |
| SHT66_RS02000 (SHT66_02000) | - | 391242..391826 (+) | 585 | WP_002377949.1 | thermonuclease family protein | - |
| SHT66_RS02005 (SHT66_02005) | - | 391937..392203 (+) | 267 | WP_002369771.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| SHT66_RS02010 (SHT66_02010) | - | 392196..392471 (+) | 276 | WP_002360769.1 | type II toxin-antitoxin system YafQ family toxin | - |
| SHT66_RS02015 (SHT66_02015) | - | 392662..393306 (-) | 645 | WP_002377952.1 | IS6 family transposase | - |
| SHT66_RS02020 (SHT66_02020) | - | 393439..394321 (+) | 883 | Protein_374 | IS256 family transposase | - |
| SHT66_RS02025 (SHT66_02025) | - | 394626..395663 (-) | 1038 | WP_002355369.1 | PTS sugar transporter subunit IIC | - |
| SHT66_RS02030 (SHT66_02030) | - | 395689..396627 (-) | 939 | WP_002370935.1 | 2-dehydropantoate 2-reductase | - |
| SHT66_RS02035 (SHT66_02035) | - | 396755..397024 (-) | 270 | Protein_377 | LPXTG cell wall anchor domain-containing protein | - |
| SHT66_RS02040 (SHT66_02040) | - | 397114..397299 (+) | 186 | WP_002358660.1 | hypothetical protein | - |
| SHT66_RS02045 (SHT66_02045) | - | 397331..397939 (+) | 609 | Protein_379 | IS6 family transposase | - |
| SHT66_RS02050 (SHT66_02050) | bsh | 398608..399582 (-) | 975 | WP_002355428.1 | choloylglycine hydrolase | - |
| SHT66_RS02055 (SHT66_02055) | - | 399806..400450 (+) | 645 | WP_002377952.1 | IS6 family transposase | - |
| SHT66_RS02060 (SHT66_02060) | - | 400623..400937 (+) | 315 | WP_002403043.1 | hypothetical protein | - |
| SHT66_RS02065 (SHT66_02065) | cylR2 | 401275..401475 (-) | 201 | WP_002370931.1 | cytolysin regulator CylR2 | - |
| SHT66_RS02070 (SHT66_02070) | cylL-L | 401879..402085 (+) | 207 | WP_002358485.1 | lanthipeptide cytolysin subunit CylL-L | - |
| SHT66_RS02075 (SHT66_02075) | cylL-S | 402119..402310 (+) | 192 | WP_002358181.1 | lanthipeptide cytolysin subunit CylL-S | - |
| SHT66_RS02080 (SHT66_02080) | - | 402371..405352 (+) | 2982 | WP_002370929.1 | type 2 lanthipeptide synthetase LanM family protein | - |
| SHT66_RS02085 (SHT66_02085) | - | 405364..407508 (+) | 2145 | WP_002370927.1 | peptidase domain-containing ABC transporter | - |
| SHT66_RS02090 (SHT66_02090) | - | 407505..408743 (+) | 1239 | WP_002368283.1 | S8 family serine peptidase | - |
| SHT66_RS02095 (SHT66_02095) | - | 408744..409727 (+) | 984 | WP_002368282.1 | site-2 protease family protein | - |
| SHT66_RS02100 (SHT66_02100) | - | 410080..410643 (+) | 564 | WP_002370925.1 | hypothetical protein | - |
| SHT66_RS02105 (SHT66_02105) | - | 411080..411547 (+) | 468 | WP_002370921.1 | hypothetical protein | - |
| SHT66_RS02110 (SHT66_02110) | - | 411625..412206 (+) | 582 | WP_002401490.1 | hypothetical protein | - |
| SHT66_RS02115 (SHT66_02115) | - | 412301..412507 (+) | 207 | WP_229017897.1 | S41 family peptidase | - |
| SHT66_RS02120 (SHT66_02120) | amaP | 412777..413343 (+) | 567 | WP_010706722.1 | alkaline shock response membrane anchor protein AmaP | - |
| SHT66_RS02125 (SHT66_02125) | - | 413360..413551 (+) | 192 | WP_002358517.1 | DUF2273 domain-containing protein | - |
| SHT66_RS02130 (SHT66_02130) | - | 413580..414116 (+) | 537 | WP_002358518.1 | Asp23/Gls24 family envelope stress response protein | - |
| SHT66_RS02135 (SHT66_02135) | - | 414391..420014 (+) | 5624 | Protein_397 | Rib/alpha-like domain-containing protein | - |
| SHT66_RS02140 (SHT66_02140) | - | 420214..421422 (+) | 1209 | WP_002358521.1 | YSIRK-targeted surface antigen transcriptional regulator | - |
| SHT66_RS02145 (SHT66_02145) | - | 421552..421968 (+) | 417 | WP_002358522.1 | hypothetical protein | - |
| SHT66_RS02150 (SHT66_02150) | - | 422104..422205 (-) | 102 | Protein_400 | IS30 family transposase | - |
| SHT66_RS02155 (SHT66_02155) | - | 422193..422930 (+) | 738 | WP_002401428.1 | hypothetical protein | - |
| SHT66_RS02160 (SHT66_02160) | - | 422976..423596 (-) | 621 | WP_033591050.1 | recombinase family protein | - |
| SHT66_RS02165 (SHT66_02165) | - | 423780..424399 (+) | 620 | Protein_403 | recombinase family protein | - |
| SHT66_RS02170 (SHT66_02170) | - | 424508..424690 (+) | 183 | WP_002358529.1 | hypothetical protein | - |
| SHT66_RS02175 (SHT66_02175) | - | 425146..425964 (-) | 819 | WP_002358531.1 | MurR/RpiR family transcriptional regulator | - |
| SHT66_RS02180 (SHT66_02180) | - | 426120..426827 (+) | 708 | WP_002358533.1 | N-acetylmannosamine-6-phosphate 2-epimerase | - |
| SHT66_RS02185 (SHT66_02185) | - | 426820..428322 (+) | 1503 | WP_002358534.1 | PTS transporter subunit EIIC | - |
| SHT66_RS02190 (SHT66_02190) | - | 428333..428815 (+) | 483 | WP_002358535.1 | PTS glucose transporter subunit IIA | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 17179.08 Da Isoelectric Point: 4.6511
>NTDB_id=903894 SHT66_RS01945 WP_002365911.1 379259..379717(+) (ssb) [Enterococcus faecalis strain ES-3-1]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF
Nucleotide
Download Length: 459 bp
>NTDB_id=903894 SHT66_RS01945 WP_002365911.1 379259..379717(+) (ssb) [Enterococcus faecalis strain ES-3-1]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.471 |
100 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.283 |
100 |
0.572 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
69.737 |
0.395 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50 |
76.316 |
0.382 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
53.774 |
69.737 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
49.138 |
76.316 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
48.276 |
76.316 |
0.368 |
| ssbB/cilA | Streptococcus mitis SK321 |
48.276 |
76.316 |
0.368 |