Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RZE78_RS21680 Genome accession   NZ_CP138515
Coordinates   4594983..4596212 (+) Length   409 a.a.
NCBI ID   WP_319427489.1    Uniprot ID   -
Organism   Variovorax paradoxus strain 2u118     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4589983..4601212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE78_RS21650 (RZE78_21650) cgtA 4590059..4591147 (-) 1089 WP_319427486.1 Obg family GTPase CgtA -
  RZE78_RS21655 (RZE78_21655) rpmA 4591218..4591475 (-) 258 WP_015866991.1 50S ribosomal protein L27 -
  RZE78_RS21660 (RZE78_21660) rplU 4591488..4591799 (-) 312 WP_015866992.1 50S ribosomal protein L21 -
  RZE78_RS21665 (RZE78_21665) - 4591988..4592980 (+) 993 WP_319427487.1 polyprenyl synthetase family protein -
  RZE78_RS21675 (RZE78_21675) pilB 4593220..4594953 (+) 1734 WP_319427488.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZE78_RS21680 (RZE78_21680) pilC 4594983..4596212 (+) 1230 WP_319427489.1 type II secretion system F family protein Machinery gene
  RZE78_RS21685 (RZE78_21685) - 4596212..4597177 (+) 966 WP_319427490.1 prepilin peptidase -
  RZE78_RS21690 (RZE78_21690) coaE 4597188..4597793 (+) 606 WP_319427491.1 dephospho-CoA kinase -
  RZE78_RS21695 (RZE78_21695) - 4597873..4599366 (+) 1494 WP_319427492.1 MBOAT family protein -
  RZE78_RS21700 (RZE78_21700) - 4599373..4600392 (+) 1020 WP_319427493.1 hypothetical protein -
  RZE78_RS21705 (RZE78_21705) zapD 4600429..4601184 (+) 756 WP_319427494.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44688.24 Da        Isoelectric Point: 9.6544

>NTDB_id=903286 RZE78_RS21680 WP_319427489.1 4594983..4596212(+) (pilC) [Variovorax paradoxus strain 2u118]
MATVASTRTSNTLKESVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGRSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLFVMAMSEFFVSYWWLIFGVIGGGT
YFFLQAWKRNERVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=903286 RZE78_RS21680 WP_319427489.1 4594983..4596212(+) (pilC) [Variovorax paradoxus strain 2u118]
ATGGCAACAGTGGCATCCACCCGCACCTCGAACACGCTCAAGGAATCTGTCTACGAGTGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTCCGGGCCGCCGGCGAGAACCAGGTACAGGCCGCCTTGCGGCGCCAGGGGGTTCTTGCGT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAGGTCCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGCTGGCA
ACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAATGCCAACCCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAGACCGGGACCTCGCTTTCGGCGGCCTTCCGCAAGTTTCCGAAGTATTTCG
ACAACCTCTACTGCAACCTGGTGGAGGCCGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTGGACCGCCTGGCGACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCCGTGGTGGTGGTCGCGTTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATTCCGGCCTTCAAGCAGGTGTTCAGCTCGTTCGGCGCCGACCTGCCCGCGC
CCACGCTGTTCGTGATGGCCATGAGCGAATTCTTCGTCTCCTACTGGTGGCTGATCTTCGGCGTGATCGGCGGCGGTACC
TACTTCTTCCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGCGGGTCATGGACCGCGCGCTGCTGCGCGTGCCGATCTT
CGGCACGCTGATCGAGAAATCGTGCGTGGCCCGCTGGACCCGCACCCTTGCCACCATGTTTGCCGCCGGCGTTCCGCTGG
TCGAGGCACTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGGCCAAGATCCAGCAGGAGGTC
TCGACCGGCACCAGCCTCACCACGGCCATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACGGCCATCGG
CGAGGAATCCGGCTCCATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAACCCATCATCATCGTGTTCCTGGGCGTGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGTTGGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.75

97.8

0.526
  pilG Neisseria gonorrhoeae MS11

52.897

97.066

0.513
  pilG Neisseria meningitidis 44/76-A

52.645

97.066

0.511
  pilC Acinetobacter baylyi ADP1

51.256

97.311

0.499
  pilC Acinetobacter baumannii D1279779

49.37

97.066

0.479
  pilC Legionella pneumophila strain ERS1305867

49.242

96.822

0.477
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

38.186

100

0.391
  pilC Vibrio campbellii strain DS40M4

39.401

98.044

0.386