Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RZE77_RS22475 Genome accession   NZ_CP138513
Coordinates   4806236..4807465 (+) Length   409 a.a.
NCBI ID   WP_319439341.1    Uniprot ID   -
Organism   Variovorax paradoxus strain SPNA7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4801236..4812465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE77_RS22445 (RZE77_22445) cgtA 4801306..4802391 (-) 1086 WP_319439337.1 Obg family GTPase CgtA -
  RZE77_RS22450 (RZE77_22450) rpmA 4802462..4802719 (-) 258 WP_015866991.1 50S ribosomal protein L27 -
  RZE77_RS22455 (RZE77_22455) rplU 4802741..4803052 (-) 312 WP_319439338.1 50S ribosomal protein L21 -
  RZE77_RS22460 (RZE77_22460) - 4803241..4804233 (+) 993 WP_319439339.1 polyprenyl synthetase family protein -
  RZE77_RS22470 (RZE77_22470) pilB 4804473..4806206 (+) 1734 WP_319439340.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZE77_RS22475 (RZE77_22475) pilC 4806236..4807465 (+) 1230 WP_319439341.1 type II secretion system F family protein Machinery gene
  RZE77_RS22480 (RZE77_22480) - 4807465..4808430 (+) 966 WP_319439342.1 prepilin peptidase -
  RZE77_RS22485 (RZE77_22485) coaE 4808441..4809046 (+) 606 WP_319427491.1 dephospho-CoA kinase -
  RZE77_RS22490 (RZE77_22490) - 4809125..4810618 (+) 1494 WP_319439343.1 MBOAT family O-acyltransferase -
  RZE77_RS22495 (RZE77_22495) - 4810625..4811644 (+) 1020 WP_319439344.1 hypothetical protein -
  RZE77_RS22500 (RZE77_22500) zapD 4811681..4812436 (+) 756 WP_319427494.1 cell division protein ZapD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44676.23 Da        Isoelectric Point: 9.6463

>NTDB_id=903268 RZE77_RS22475 WP_319439341.1 4806236..4807465(+) (pilC) [Variovorax paradoxus strain SPNA7]
MATVASTRTSNTLKESVYEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSSAFRKFPKYFDNLYCNLVEAGEAAGILEDLLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLFVMAMSEFFVSYWWLIFGVIGGGT
YFFLQAWKRNERVQRVMDRALLRVPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=903268 RZE77_RS22475 WP_319439341.1 4806236..4807465(+) (pilC) [Variovorax paradoxus strain SPNA7]
ATGGCAACAGTGGCATCCACCCGCACCTCGAACACGCTCAAGGAATCTGTCTACGAGTGGGAGGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTCCGGGCCGCCGGCGAGAACCAGGTGCAGGCCGCTCTGCGGCGCCAGGGCGTTCTTGCGT
CCAAGATCAAGAAGCGCCGCATGCGCTCGGGCAAGTCCATCAAGCCCAAGGACATCGCGATCTTCACGCGCCAGCTGGCA
ACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTGGGCCGCGGCAATGCCAACCCGAGCGTGGCCAA
GCTGCTCAACGACATCCGCAGCGACGTGGAGACCGGCACCTCGCTGTCGTCCGCCTTCCGCAAGTTTCCGAAGTATTTCG
ACAACCTCTACTGCAACCTGGTGGAAGCCGGCGAAGCGGCCGGTATCCTGGAAGACCTGCTGGACCGCCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCCACCTCGGTGGTGGTGGTCGCATTCGT
GGTGGTGGCCATCATCATGATCTTCGTGATTCCGGCCTTCAAGCAGGTGTTCAGCTCGTTCGGCGCCGACCTGCCCGCGC
CCACGCTGTTCGTGATGGCCATGAGCGAATTCTTCGTCTCCTACTGGTGGCTGATCTTCGGCGTGATCGGCGGCGGCACC
TACTTTTTCCTGCAGGCCTGGAAGCGCAACGAACGCGTGCAGCGGGTCATGGACCGCGCGCTGCTGCGCGTGCCGATCTT
CGGCACGCTGATCGAGAAATCTTGCGTGGCCCGCTGGACCCGCACCCTTGCCACCATGTTCGCCGCCGGCGTTCCGCTGG
TCGAGGCACTCGACTCGGTGGGCGGCGCCTCGGGCAACACCGTCTACGGCGACGCCACGGCCAAGATCCAGCAGGAAGTC
TCGACCGGCACCAGCCTCACCACGGCCATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACGGCCATCGG
CGAAGAGTCCGGCTCCATCGACCACATGCTCGGCAAGGCCGCCGACTTCTACGAGTCCGAGGTGGACGACATGGTGGCCG
GCCTCTCGAGCCTGATGGAGCCCATCATCATCGTGTTCCTGGGCGTGATCATCGGCGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGTTGGGCCAGGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.8

0.531
  pilG Neisseria gonorrhoeae MS11

52.645

97.066

0.511
  pilG Neisseria meningitidis 44/76-A

52.393

97.066

0.509
  pilC Acinetobacter baylyi ADP1

51.508

97.311

0.501
  pilC Acinetobacter baumannii D1279779

49.874

97.066

0.484
  pilC Legionella pneumophila strain ERS1305867

49.495

96.822

0.479
  pilC Vibrio cholerae strain A1552

40.441

99.756

0.403
  pilC Thermus thermophilus HB27

38.425

100

0.394
  pilC Vibrio campbellii strain DS40M4

39.401

98.044

0.386