Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SGW13_RS01075 | Genome accession | NZ_CP138502 |
| Coordinates | 220506..220937 (+) | Length | 143 a.a. |
| NCBI ID | WP_323052247.1 | Uniprot ID | - |
| Organism | Pediococcus acidilactici strain AF2019 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 215506..225937
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SGW13_RS01025 (SGW13_01025) | - | 215571..215786 (+) | 216 | WP_128472028.1 | hypothetical protein | - |
| SGW13_RS01030 (SGW13_01030) | - | 215869..216336 (+) | 468 | WP_128472029.1 | helix-turn-helix domain-containing protein | - |
| SGW13_RS01035 (SGW13_01035) | - | 216318..216590 (+) | 273 | WP_128472030.1 | hypothetical protein | - |
| SGW13_RS01040 (SGW13_01040) | - | 216601..216744 (+) | 144 | WP_159208631.1 | hypothetical protein | - |
| SGW13_RS01045 (SGW13_01045) | - | 216837..217730 (+) | 894 | WP_128472031.1 | DUF1351 domain-containing protein | - |
| SGW13_RS01050 (SGW13_01050) | - | 217733..217927 (+) | 195 | WP_323052245.1 | hypothetical protein | - |
| SGW13_RS01055 (SGW13_01055) | - | 217924..218550 (+) | 627 | WP_323052246.1 | ERF family protein | - |
| SGW13_RS01060 (SGW13_01060) | - | 218543..219424 (+) | 882 | WP_159208628.1 | helix-turn-helix domain-containing protein | - |
| SGW13_RS01065 (SGW13_01065) | - | 219429..220151 (+) | 723 | WP_159208627.1 | putative HNHc nuclease | - |
| SGW13_RS01070 (SGW13_01070) | - | 220096..220503 (+) | 408 | WP_032540532.1 | hypothetical protein | - |
| SGW13_RS01075 (SGW13_01075) | ssb | 220506..220937 (+) | 432 | WP_323052247.1 | single-stranded DNA-binding protein | Machinery gene |
| SGW13_RS01080 (SGW13_01080) | - | 221108..221272 (-) | 165 | WP_159208625.1 | YjzC family protein | - |
| SGW13_RS01085 (SGW13_01085) | - | 221411..221602 (+) | 192 | WP_159206544.1 | helix-turn-helix domain-containing protein | - |
| SGW13_RS01090 (SGW13_01090) | - | 221610..221801 (+) | 192 | WP_159208624.1 | hypothetical protein | - |
| SGW13_RS01095 (SGW13_01095) | - | 221794..221988 (+) | 195 | WP_159208623.1 | hypothetical protein | - |
| SGW13_RS01100 (SGW13_01100) | - | 221985..222221 (+) | 237 | WP_159208622.1 | hypothetical protein | - |
| SGW13_RS01105 (SGW13_01105) | - | 222290..222484 (+) | 195 | WP_323052248.1 | hypothetical protein | - |
| SGW13_RS01110 (SGW13_01110) | - | 222489..222788 (+) | 300 | WP_159208621.1 | MazG-like family protein | - |
| SGW13_RS01115 (SGW13_01115) | - | 222926..223171 (+) | 246 | WP_323052249.1 | hypothetical protein | - |
| SGW13_RS01120 (SGW13_01120) | - | 223368..223802 (+) | 435 | WP_323052250.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| SGW13_RS01135 (SGW13_01135) | - | 224643..224906 (+) | 264 | WP_323052251.1 | hypothetical protein | - |
| SGW13_RS01140 (SGW13_01140) | - | 224906..225595 (+) | 690 | WP_323052252.1 | terminase gpP N-terminus-related DNA-binding protein | - |
Sequence
Protein
Download Length: 143 a.a. Molecular weight: 16094.76 Da Isoelectric Point: 4.8890
>NTDB_id=903192 SGW13_RS01075 WP_323052247.1 220506..220937(+) (ssb) [Pediococcus acidilactici strain AF2019]
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENLCNFTHKGSLVGIDGRIQTS
TYEKEGQRVYSTQVVVDSFSLLEPKQQSQQRGQQSNASDALHDNFGQPTNNNDFDIDDNDLPF
MINRTVLVGRLTKDPEIRYTQSGMAVANFTMAVNRQFTNANGEREADFISCIVWRKAAENLCNFTHKGSLVGIDGRIQTS
TYEKEGQRVYSTQVVVDSFSLLEPKQQSQQRGQQSNASDALHDNFGQPTNNNDFDIDDNDLPF
Nucleotide
Download Length: 432 bp
>NTDB_id=903192 SGW13_RS01075 WP_323052247.1 220506..220937(+) (ssb) [Pediococcus acidilactici strain AF2019]
ATGATTAATCGAACCGTATTAGTCGGACGCCTAACCAAGGATCCAGAAATCCGTTATACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGACAGTTCACCAACGCTAATGGCGAGCGAGAAGCGGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCGGCCGAAAACTTATGTAATTTTACCCACAAAGGATCATTGGTCGGGATTGACGGTCGGATTCAAACGAGT
ACGTACGAAAAGGAAGGCCAGCGTGTTTACTCAACCCAGGTGGTTGTAGATAGCTTTTCGCTGTTGGAACCAAAGCAACA
AAGCCAACAACGTGGCCAACAATCCAATGCTAGCGATGCTTTGCATGACAATTTCGGACAGCCTACTAACAATAACGATT
TTGATATTGATGACAACGATCTGCCATTTTAG
ATGATTAATCGAACCGTATTAGTCGGACGCCTAACCAAGGATCCAGAAATCCGTTATACCCAATCAGGGATGGCGGTGGC
CAACTTTACTATGGCCGTGAACCGACAGTTCACCAACGCTAATGGCGAGCGAGAAGCGGACTTTATCAGCTGTATTGTCT
GGAGAAAGGCGGCCGAAAACTTATGTAATTTTACCCACAAAGGATCATTGGTCGGGATTGACGGTCGGATTCAAACGAGT
ACGTACGAAAAGGAAGGCCAGCGTGTTTACTCAACCCAGGTGGTTGTAGATAGCTTTTCGCTGTTGGAACCAAAGCAACA
AAGCCAACAACGTGGCCAACAATCCAATGCTAGCGATGCTTTGCATGACAATTTCGGACAGCCTACTAACAATAACGATT
TTGATATTGATGACAACGATCTGCCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.529 |
100 |
0.636 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.458 |
100 |
0.587 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.958 |
100 |
0.42 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.545 |
76.923 |
0.42 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
39.86 |
100 |
0.399 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
39.86 |
100 |
0.399 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
39.161 |
100 |
0.392 |
| ssbB/cilA | Streptococcus mitis SK321 |
39.161 |
100 |
0.392 |