Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RZE79_RS06475 Genome accession   NZ_CP138496
Coordinates   1438769..1439998 (-) Length   409 a.a.
NCBI ID   WP_319359495.1    Uniprot ID   -
Organism   Variovorax sp. EBFNA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433769..1444998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZE79_RS06450 (RZE79_06450) zapD 1433790..1434545 (-) 756 WP_153280312.1 cell division protein ZapD -
  RZE79_RS06455 (RZE79_06455) - 1434576..1435607 (-) 1032 WP_319359491.1 hypothetical protein -
  RZE79_RS06460 (RZE79_06460) - 1435609..1437102 (-) 1494 WP_319359492.1 MBOAT family protein -
  RZE79_RS06465 (RZE79_06465) coaE 1437179..1437790 (-) 612 WP_319359493.1 dephospho-CoA kinase -
  RZE79_RS06470 (RZE79_06470) - 1437804..1438769 (-) 966 WP_319359494.1 A24 family peptidase -
  RZE79_RS06475 (RZE79_06475) pilC 1438769..1439998 (-) 1230 WP_319359495.1 type II secretion system F family protein Machinery gene
  RZE79_RS06480 (RZE79_06480) pilB 1440023..1441756 (-) 1734 WP_319359496.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZE79_RS06490 (RZE79_06490) - 1441999..1442991 (-) 993 WP_153286198.1 polyprenyl synthetase family protein -
  RZE79_RS06495 (RZE79_06495) rplU 1443174..1443485 (+) 312 WP_042578903.1 50S ribosomal protein L21 -
  RZE79_RS06500 (RZE79_06500) rpmA 1443498..1443758 (+) 261 WP_013543198.1 50S ribosomal protein L27 -
  RZE79_RS06505 (RZE79_06505) cgtA 1443832..1444908 (+) 1077 WP_192193331.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44743.48 Da        Isoelectric Point: 9.5343

>NTDB_id=903156 RZE79_RS06475 WP_319359495.1 1438769..1439998(-) (pilC) [Variovorax sp. EBFNA2]
MATVASSRSQVTHKEFVFEWEGKDRNGKLVRGELRAAGENQVQAALRRQGVLASKIKKRRMRSGKSIKPKDIAIFTRQLA
TMMKAGVPLLQSFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDNLYCNLVEAGEAAGILEELLDRLATY
MEKTEAIKSKIKSALMYPTSVVVVAFIVVAIIMIFVIPAFKEVFTSFGADLPAPTLIVMAISEFFVSYWWLIFGVLGGGI
YFFLQAWKRNERVQKVMDRLLLRLPIFGTLIEKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNSVYGDATAKIQQEV
STGTSLTTAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYL
PIFKLGQVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=903156 RZE79_RS06475 WP_319359495.1 1438769..1439998(-) (pilC) [Variovorax sp. EBFNA2]
ATGGCAACAGTGGCATCCTCCCGCTCCCAGGTCACGCACAAGGAATTCGTCTTCGAATGGGAAGGCAAGGACCGCAACGG
CAAGCTGGTGCGCGGCGAGCTTCGCGCCGCCGGGGAGAACCAGGTCCAGGCGGCGCTGCGCCGTCAGGGCGTGCTGGCGT
CCAAGATCAAGAAGCGCCGCATGCGTTCGGGCAAGTCGATCAAGCCCAAGGACATTGCGATCTTCACGCGCCAGCTCGCG
ACCATGATGAAAGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTCGGCCGCGGCAACGCGAACCCGAGCGTCGCCAA
GCTGCTGAACGACATCCGCAGCGATGTCGAGACCGGCACCTCGCTGTCGGCGGCATTCCGCAAGTTTCCGAAGTACTTCG
ACAACCTGTATTGCAACCTGGTGGAAGCCGGTGAGGCGGCCGGTATTCTGGAAGAACTGCTCGACCGCCTGGCCACCTAC
ATGGAGAAGACCGAGGCGATCAAGTCGAAGATCAAGTCGGCGCTGATGTATCCGACCTCGGTGGTCGTTGTGGCCTTCAT
CGTGGTGGCGATCATCATGATCTTCGTGATTCCCGCATTCAAGGAAGTGTTCACCTCGTTCGGTGCTGACCTGCCCGCGC
CGACGCTGATCGTGATGGCGATCAGCGAGTTCTTCGTTTCCTACTGGTGGTTGATCTTCGGCGTGCTCGGTGGCGGCATC
TACTTCTTTTTGCAAGCCTGGAAGCGCAACGAGCGTGTTCAGAAGGTCATGGACCGCCTGCTGCTGCGCCTTCCCATCTT
CGGTACGCTGATCGAAAAATCCTGCGTGGCCCGCTGGACCCGCACGCTCGCCACCATGTTCGCAGCCGGCGTTCCGCTGG
TCGAGGCGCTCGATTCCGTGGGCGGCGCATCGGGCAACTCGGTGTACGGAGACGCCACCGCCAAGATCCAGCAGGAAGTC
TCGACCGGCACCAGCCTGACCACGGCCATGACCAACGTCAACCTGTTCCCCTCGATGGTGATCCAGATGACCGCCATCGG
CGAAGAATCAGGCTCGATCGATCACATGCTGGGCAAGGCCGCGGACTTCTACGAGTCCGAAGTCGACGACATGGTCGCCG
GCCTTTCCAGCCTGATGGAGCCCATCATCATCGTGTTCCTCGGCGTCATCATCGGTGGCATCGTGGTGTCGATGTACCTG
CCCATCTTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

98.778

0.533
  pilG Neisseria gonorrhoeae MS11

52.897

97.066

0.513
  pilC Acinetobacter baylyi ADP1

50.852

100

0.511
  pilG Neisseria meningitidis 44/76-A

52.645

97.066

0.511
  pilC Legionella pneumophila strain ERS1305867

50

96.822

0.484
  pilC Acinetobacter baumannii D1279779

49.874

97.066

0.484
  pilC Vibrio cholerae strain A1552

41.206

97.311

0.401
  pilC Thermus thermophilus HB27

38.425

100

0.394
  pilC Vibrio campbellii strain DS40M4

39.055

98.289

0.384