Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SGJ46_RS13040 Genome accession   NZ_CP138461
Coordinates   2703320..2704546 (+) Length   408 a.a.
NCBI ID   WP_177155276.1    Uniprot ID   -
Organism   Acinetobacter indicus strain CZH-5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2698320..2709546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGJ46_RS13000 rimP 2698766..2699290 (-) 525 WP_005181784.1 ribosome maturation factor RimP -
  SGJ46_RS13025 secG 2700159..2700488 (-) 330 WP_005181783.1 preprotein translocase subunit SecG -
  SGJ46_RS13030 tpiA 2700502..2701293 (-) 792 WP_005181780.1 triose-phosphate isomerase -
  SGJ46_RS13035 pilB 2701583..2703289 (+) 1707 WP_016659655.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SGJ46_RS13040 pilC 2703320..2704546 (+) 1227 WP_177155276.1 type II secretion system F family protein Machinery gene
  SGJ46_RS13045 pilD 2704546..2705406 (+) 861 WP_177155275.1 prepilin peptidase Machinery gene
  SGJ46_RS13050 coaE 2705417..2706025 (+) 609 WP_177155274.1 dephospho-CoA kinase -
  SGJ46_RS13055 - 2706022..2706942 (-) 921 WP_168396667.1 DMT family transporter -
  SGJ46_RS13060 rlmB 2706960..2707712 (-) 753 WP_005181769.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SGJ46_RS13065 - 2707818..2708141 (-) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44909.39 Da        Isoelectric Point: 9.9079

>NTDB_id=902938 SGJ46_RS13040 WP_177155276.1 2703320..2704546(+) (pilC) [Acinetobacter indicus strain CZH-5]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=902938 SGJ46_RS13040 WP_177155276.1 2703320..2704546(+) (pilC) [Acinetobacter indicus strain CZH-5]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAATCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAAAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCGGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCACCTCTTTTGGTGCCGACTTACCAGCCTTCA
CCAAAATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCATCCATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.235

100

0.882
  pilC Acinetobacter baylyi ADP1

83.824

100

0.838
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.755

0.608
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

48.241

97.549

0.471
  pilG Neisseria meningitidis 44/76-A

48.241

97.549

0.471
  pilC Vibrio cholerae strain A1552

42.892

100

0.429
  pilC Vibrio campbellii strain DS40M4

42.574

99.02

0.422
  pilC Thermus thermophilus HB27

36.658

98.284

0.36