Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SE336_RS15505 Genome accession   NZ_CP138376
Coordinates   3655858..3657117 (+) Length   419 a.a.
NCBI ID   WP_127159846.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain AHX463     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3650858..3662117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE336_RS15490 (SE336_15500) pilR 3651436..3652830 (+) 1395 WP_127159848.1 sigma-54-dependent transcriptional regulator Regulator
  SE336_RS15495 (SE336_15505) pilB 3653064..3654800 (-) 1737 WP_415916240.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SE336_RS15500 (SE336_15510) - 3655033..3655482 (-) 450 WP_127159847.1 pilin -
  SE336_RS15505 (SE336_15515) pilC 3655858..3657117 (+) 1260 WP_127159846.1 type II secretion system F family protein Machinery gene
  SE336_RS15510 (SE336_15520) - 3657124..3657987 (+) 864 WP_039519369.1 prepilin peptidase -
  SE336_RS15515 (SE336_15525) coaE 3658001..3658624 (+) 624 WP_415916241.1 dephospho-CoA kinase -
  SE336_RS15520 (SE336_15530) - 3658724..3658880 (+) 157 Protein_3038 SymE family type I addiction module toxin -
  SE336_RS15525 (SE336_15535) - 3658985..3660319 (-) 1335 WP_016904089.1 sensor histidine kinase -
  SE336_RS15530 (SE336_15540) - 3660312..3660989 (-) 678 WP_006448355.1 response regulator transcription factor -
  SE336_RS15535 (SE336_15545) - 3661017..3661495 (-) 479 Protein_3041 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45623.80 Da        Isoelectric Point: 10.2972

>NTDB_id=902516 SE336_RS15505 WP_127159846.1 3655858..3657117(+) (pilC) [Xanthomonas arboricola strain AHX463]
MSASRTAIAKSSASRDTSPLPLFVWEGTDKRGIKMKGEQVARNANMLRAELRRQGITPNIVKSKPKPLFGAAGKKVTAKE
ISFFSRQMATMMKSGVPIVSALEIIGSGQKNPRMRDMVGKIRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVAWWWL
ILFVAVGTVTGFFFAYKRSPAMQHGMDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEA
AVQRMRDDVSVGYPVNVAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=902516 SE336_RS15505 WP_127159846.1 3655858..3657117(+) (pilC) [Xanthomonas arboricola strain AHX463]
ATGTCCGCAAGCCGTACAGCCATTGCGAAATCGTCAGCATCACGTGACACGAGCCCATTGCCTTTGTTTGTTTGGGAGGG
AACGGACAAGCGAGGCATCAAAATGAAGGGCGAACAGGTTGCCAGAAATGCCAACATGCTTCGCGCTGAACTACGCCGAC
AAGGGATTACACCCAATATTGTAAAATCGAAGCCAAAGCCGTTATTTGGTGCAGCGGGCAAGAAAGTTACAGCTAAAGAG
ATCTCCTTTTTCAGCCGTCAGATGGCGACCATGATGAAATCCGGTGTGCCTATTGTAAGTGCGCTTGAGATCATTGGTAG
CGGTCAAAAGAATCCGCGCATGCGCGATATGGTTGGCAAGATTCGTACTGATATTGAAGGCGGCTCGTCTCTGCACGAAG
CAATCAGCAGGCATCCGGTGCAGTTCGATGAACTGTACCGCAATTTAGTGAGAGCCGGCGAAGGCGCCGGCGTACTTGAA
ACGGTCTTGGATACGATTGCATCTTATAAAGAAAATATTGAAGCACTTAAAGGGAAAATTAAGAAGGCTCTTTTTTATCC
AGCGATGGTGATGGCAGTTGCCCTGATTGTTAGCTCAATCTTGCTTATATGGGTAGTCCCACAATTTGAGGACGTCTTTA
AAGGCTTTGGTGCTGAACTTCCAGCTTTTACTCAGTTAATCGTAAATGCATCTCGCTTCATGGTTGCCTGGTGGTGGCTT
ATTTTGTTTGTCGCCGTAGGCACAGTTACTGGCTTTTTCTTCGCTTACAAGCGTTCGCCAGCCATGCAGCATGGTATGGA
CAGGCTCATTCTCAAGGTCCCCGTAATTGGGCAGATCATGCATAACAGTGCAATTGCCAGATTTGCGCGTACTACCGCAG
TCACCTTCAAAGCCGGGGTACCTCTTGTAGAGGCCCTTGGCATTGTTGCGGGAGCTACTGGAAATTCTGTATATGAAGCT
GCAGTACAGCGTATGCGCGACGACGTGTCTGTAGGGTATCCAGTTAATGTTGCCATGAAACAGGTCAATTTGTTTCCTCA
TATGGTGATCCAGATGACAGCTATCGGCGAAGAAGCTGGCGCACTAGATGCCATGCTGTTCAAAGTTGCCGAGTACTTCG
AACAGGAAGTCAACAATGCTGTGGATGCGCTTAGCAGTTTGTTGGAGCCAATGATCATGGTATTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.086

96.659

0.513
  pilC Pseudomonas stutzeri DSM 10701

51.889

94.749

0.492
  pilC Acinetobacter baylyi ADP1

50.369

97.136

0.489
  pilC Acinetobacter baumannii D1279779

48.894

97.136

0.475
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

40.099

96.42

0.387
  pilC Vibrio campbellii strain DS40M4

39.043

94.749

0.37
  pilC Thermus thermophilus HB27

37.376

96.42

0.36