Detailed information NTG0902514

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SE336_RS15490
• Genome accession: NZ_CP138376
• Coordinates: 3651436..3652830 (+)
• Length: 464 a.a.
• NCBI ID: WP_127159848.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola strain AHX463
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3646436..3657830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SE336_RS15475 (SE336_15485)	sucD	3647329..3648204 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
SE336_RS15480 (SE336_15490)	sucC	3648229..3649398 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
SE336_RS15485 (SE336_15495)	-	3649630..3651243 (+)	1614	WP_016901263.1	sensor histidine kinase	-
SE336_RS15490 (SE336_15500)	pilR	3651436..3652830 (+)	1395	WP_127159848.1	sigma-54-dependent transcriptional regulator	Regulator
SE336_RS15495 (SE336_15505)	pilB	3653064..3654800 (-)	1737	WP_415916240.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SE336_RS15500 (SE336_15510)	-	3655033..3655482 (-)	450	WP_127159847.1	pilin	-
SE336_RS15505 (SE336_15515)	pilC	3655858..3657117 (+)	1260	WP_127159846.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50130.52 Da
• Isoelectric Point: 6.5112

>NTDB_id=902514 SE336_RS15490 WP_127159848.1 3651436..3652830(+) (pilR) [Xanthomonas arboricola strain AHX463]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=902514 SE336_RS15490 WP_127159848.1 3651436..3652830(+) (pilR) [Xanthomonas arboricola strain AHX463]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCAGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCAGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTCACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGTTGGAAAACATACTAGAACGCGCCCTGGCCTTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTGGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTATAAATTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491