Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   SE858_RS05175 Genome accession   NZ_CP138368
Coordinates   1029159..1030040 (+) Length   293 a.a.
NCBI ID   WP_257151376.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR92     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024159..1035040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE858_RS05165 (SE858_05165) rpoC 1024857..1028507 (+) 3651 WP_000228729.1 DNA-directed RNA polymerase subunit beta' -
  SE858_RS05170 (SE858_05170) - 1028621..1028986 (+) 366 WP_000285373.1 DUF1033 family protein -
  SE858_RS05175 (SE858_05175) comYA 1029159..1030040 (+) 882 WP_257151376.1 competence type IV pilus ATPase ComGA Machinery gene
  SE858_RS05180 (SE858_05180) comYB 1030037..1031080 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  SE858_RS05185 (SE858_05185) comGF 1031077..1031532 (+) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  SE858_RS05190 (SE858_05190) comGG 1031510..1031881 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  SE858_RS05195 (SE858_05195) comYH 1031996..1032970 (+) 975 WP_001008574.1 class I SAM-dependent methyltransferase Machinery gene
  SE858_RS05200 (SE858_05200) - 1033002..1034195 (+) 1194 WP_000047534.1 acetate kinase -
  SE858_RS05205 (SE858_05205) - 1034347..1034553 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  SE858_RS05210 (SE858_05210) - 1034612..1034749 (+) 138 WP_001865900.1 hypothetical protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33493.62 Da        Isoelectric Point: 7.4269

>NTDB_id=902296 SE858_RS05175 WP_257151376.1 1029159..1030040(+) (comYA) [Streptococcus agalactiae strain SagR92]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVE

Nucleotide


Download         Length: 882 bp        

>NTDB_id=902296 SE858_RS05175 WP_257151376.1 1029159..1030040(+) (comYA) [Streptococcus agalactiae strain SagR92]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGAAT
AG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.