Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SC192_RS16775 Genome accession   NZ_CP138205
Coordinates   3527247..3528473 (+) Length   408 a.a.
NCBI ID   WP_348896283.1    Uniprot ID   A0AB39JZ83
Organism   Acinetobacter sp. 2019-01-05     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3522247..3533473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC192_RS16740 (SC192_16745) rimP 3522919..3523443 (-) 525 WP_348896278.1 ribosome maturation factor RimP -
  SC192_RS16760 (SC192_16765) secG 3524080..3524409 (-) 330 WP_348896279.1 preprotein translocase subunit SecG -
  SC192_RS16765 (SC192_16770) tpiA 3524422..3525216 (-) 795 WP_348896280.1 triose-phosphate isomerase -
  SC192_RS16770 (SC192_16775) pilB 3525507..3527219 (+) 1713 WP_348896282.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SC192_RS16775 (SC192_16780) pilC 3527247..3528473 (+) 1227 WP_348896283.1 type II secretion system F family protein Machinery gene
  SC192_RS16780 (SC192_16785) pilD 3528473..3529333 (+) 861 WP_348896285.1 prepilin peptidase Machinery gene
  SC192_RS16785 (SC192_16790) coaE 3529335..3529931 (+) 597 WP_348896286.1 dephospho-CoA kinase -
  SC192_RS16790 (SC192_16795) - 3529928..3530842 (-) 915 WP_348896287.1 DMT family transporter -
  SC192_RS16795 (SC192_16800) rlmB 3530878..3531627 (-) 750 WP_348896288.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SC192_RS16800 (SC192_16805) - 3531730..3532056 (-) 327 WP_348896289.1 pyrimidine/purine nucleoside phosphorylase -
  SC192_RS16805 (SC192_16810) - 3532133..3533443 (-) 1311 WP_348896290.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45048.60 Da        Isoelectric Point: 10.0201

>NTDB_id=901414 SC192_RS16775 WP_348896283.1 3527247..3528473(+) (pilC) [Acinetobacter sp. 2019-01-05]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYHQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAQLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=901414 SC192_RS16775 WP_348896283.1 3527247..3528473(+) (pilC) [Acinetobacter sp. 2019-01-05]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCGGCTAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGTGTCACTGTTCGAACTATTCGTGAAAAGC
GTAAAAATATTCTTGAAGGTTTGTTTAAGAAAAAAGTATCAACACTTGATATTACGATTTTTACTCGACAACTTGCGACC
ATGATGAAAGCGGGTGTACCCCTCGTACAAGGTTTTGAAATTGTTGCCGAAGGTTTGGAAAATCCAGCCATGCGTGAGGT
GGTACTTGGCATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCATCAACATTTCGATA
ACCTATTTTGTTCACTTGTAGAATCTGGTGAACAATCAGGTGCACTTGAAACAATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGTTAAAACAGAAAATCAAGAAAGCCATGAAGTACCCTGCCACGGTTATTGTGGTAGCGATTGTGGT
GACCATCATTTTGATGGTTAAAGTAGTTCCAGTATTCCAAGATCTCTTTTCATCTTTCGGCGCACAACTACCAGCCTTTA
CGCAAATGGTCGTAAATATGTCGAAGTGGATGCAAGAATATTGGTTCATTATGATTATTGTGATTGGTGCAATCATTGCT
GCCTTTTTAGAAGCTAAAAAGCGCAGTAAAAAGTTTCGTGATGGTTTAGATAAACTCACGCTTAAATTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCTCGTTATAGCCGTACACTTGCTACAACATTTGCAGCAGGTGTTCCACTCATTG
ATGCACTTGAGTCGACTGCTGGCGCAACCAACAATGTTATCTATGAGAAAGCCGTTATGAAAATTCGTGAAGATGTTGCA
ACAGGACAACAACTTCAGTTTGCCATGCGTATATCTAACCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCTTTAGACAGCATGCTAGATAAAGTTGCCACCTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTTGTAGGCGGTCTAGTGATTGCGATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

52.346

99.265

0.52
  pilG Neisseria gonorrhoeae MS11

46.617

97.794

0.456
  pilG Neisseria meningitidis 44/76-A

46.617

97.794

0.456
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365