NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	SC192_RS16780	Genome accession	NZ_CP138205
Coordinates	3528473..3529333 (+)	Length	286 a.a.
NCBI ID	WP_348896285.1	Uniprot ID	A0AB39K643
Organism	Acinetobacter sp. 2019-01-05
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3523473..3534333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SC192_RS16760 (SC192_16765)	secG	3524080..3524409 (-)	330	WP_348896279.1	preprotein translocase subunit SecG	-
SC192_RS16765 (SC192_16770)	tpiA	3524422..3525216 (-)	795	WP_348896280.1	triose-phosphate isomerase	-
SC192_RS16770 (SC192_16775)	pilB	3525507..3527219 (+)	1713	WP_348896282.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SC192_RS16775 (SC192_16780)	pilC	3527247..3528473 (+)	1227	WP_348896283.1	type II secretion system F family protein	Machinery gene
SC192_RS16780 (SC192_16785)	pilD	3528473..3529333 (+)	861	WP_348896285.1	prepilin peptidase	Machinery gene
SC192_RS16785 (SC192_16790)	coaE	3529335..3529931 (+)	597	WP_348896286.1	dephospho-CoA kinase	-
SC192_RS16790 (SC192_16795)	-	3529928..3530842 (-)	915	WP_348896287.1	DMT family transporter	-
SC192_RS16795 (SC192_16800)	rlmB	3530878..3531627 (-)	750	WP_348896288.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
SC192_RS16800 (SC192_16805)	-	3531730..3532056 (-)	327	WP_348896289.1	pyrimidine/purine nucleoside phosphorylase	-
SC192_RS16805 (SC192_16810)	-	3532133..3533443 (-)	1311	WP_348896290.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32077.49 Da Isoelectric Point: 7.1786

                                >NTDB_id=901415 SC192_RS16780 WP_348896285.1 3528473..3529333(+) (pilD) [Acinetobacter sp. 2019-01-05]

MQEIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPVIDHAKLTLSKPASSCPECHHP

IRWYQNIPVISWLVLRGKCGQCQHPISIRYPAVELLTMLCSLVVVMVFGPTIQMLWGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPSSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNENQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=901415 SC192_RS16780 WP_348896285.1 3528473..3529333(+) (pilD) [Acinetobacter sp. 2019-01-05]

ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTCTATATTGCAGTTGCACTTGTGAGCCTATGTATTGG

TAGCTTCCTGAATGTGGTGATTTATCGCACGCCAAAAATGATGGAACAAGACTGGCAGCAAGAATGCCAAATGCTACTCA

ACCCTGAGCAGCCTGTTATTGACCATGCAAAGCTGACATTAAGTAAGCCTGCTTCATCATGTCCTGAGTGCCACCACCCC

ATTCGTTGGTATCAAAACATTCCTGTCATAAGCTGGCTAGTGTTAAGAGGAAAGTGCGGGCAATGTCAGCACCCGATTAG

CATACGTTATCCAGCTGTTGAACTACTTACCATGCTATGTTCACTGGTAGTGGTCATGGTATTTGGCCCAACTATACAAA

TGCTTTGGGGACTCGTTCTTACCTGGGTACTAATTGCCCTTACCTTTATTGATTTCGATACGCAGTTATTACCCGATCGC

TTTACCTTACCTTTGGCTGCACTCGGCTTAGGCATTAACACCTTTAATATTTACACCTCACCTAGCTCAGCGATTTGGGG

ATATTTAATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAGTTACTTGCAGCTTTAGGGGCATGGATGGGGCCATTGATGCTACCGTTAATTGTGCTATTGTCATCTTTA

CTAGGTGCAATTATTGGCATCATTTTATTAAAGTTACGTAATGAAAATCAGCCTTTTGCTTTTGGACCATATATTGCGAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	52.03	94.755	0.493
pilD	Vibrio campbellii strain DS40M4	52.03	94.755	0.493
pilD	Neisseria gonorrhoeae MS11	46.183	91.608	0.423

Detailed information NTG0901415