Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LDP65_RS18670 Genome accession   NZ_AP025152
Coordinates   4151510..4152610 (-) Length   366 a.a.
NCBI ID   WP_126609778.1    Uniprot ID   A0AAV5NPI8
Organism   Vibrio penaeicida strain TUMSAT-OK1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4146510..4157610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDP65_RS18640 hemF 4147062..4147979 (-) 918 WP_101115238.1 oxygen-dependent coproporphyrinogen oxidase -
  LDP65_RS18645 - 4148002..4148559 (-) 558 WP_126609781.1 L-threonylcarbamoyladenylate synthase -
  LDP65_RS18650 purE 4148752..4149237 (+) 486 WP_224055286.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  LDP65_RS18655 - 4149243..4150370 (+) 1128 WP_126609780.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LDP65_RS18660 - 4150451..4151020 (-) 570 WP_126609779.1 type I DNA topoisomerase -
  LDP65_RS18665 - 4151034..4151507 (-) 474 WP_101115243.1 DUF494 family protein -
  LDP65_RS18670 dprA 4151510..4152610 (-) 1101 WP_126609778.1 DNA-processing protein DprA Machinery gene
  LDP65_RS18675 - 4152611..4153717 (-) 1107 WP_126609777.1 LysM peptidoglycan-binding domain-containing protein -
  LDP65_RS18680 def 4153835..4154356 (+) 522 WP_101115246.1 peptide deformylase -
  LDP65_RS18685 fmt 4154391..4155338 (+) 948 WP_126609776.1 methionyl-tRNA formyltransferase -
  LDP65_RS18690 rsmB 4155476..4156756 (+) 1281 WP_126609775.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39523.95 Da        Isoelectric Point: 5.8039

>NTDB_id=90106 LDP65_RS18670 WP_126609778.1 4151510..4152610(-) (dprA) [Vibrio penaeicida strain TUMSAT-OK1]
MTENELRAWLTLSFTPQLGGQSLTRLLTIDSPVNLLSSSEERWQAIGLKPKQIQFLKASSHPEVDECLEWQLASNHHIVT
LLDCAFPPLLKEVSSPPTTLFVKGDARSLSTPQIAMVGSRNASIEGLQTARAFAKDLSANGLVVTSGLALGVDGHAHDGA
LEGGGQTVAVLGSGLDCIYPARHRKLAQRIIEQGALVSEFRPNTKPRPEHFPRRNRIISGLSVGVFVVEAAERSGSLITA
RYAAEQGRDVFALPGSIHNPNSRGGNALIKSGACLVQSSEDILQEVENLVSWSFSQQTSIFSEEASQEELPFPELMANVG
LEATPVDILAERTHIPVHEVMMQLLELELSGYVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=90106 LDP65_RS18670 WP_126609778.1 4151510..4152610(-) (dprA) [Vibrio penaeicida strain TUMSAT-OK1]
ATGACAGAAAATGAGTTGAGAGCTTGGCTGACATTGAGTTTTACGCCCCAATTGGGTGGTCAGTCTCTGACTCGATTACT
CACTATTGATTCTCCCGTCAATTTACTTTCGTCCAGTGAAGAGCGATGGCAAGCCATAGGGCTTAAGCCGAAACAAATTC
AATTCCTTAAAGCCAGTTCACATCCAGAGGTCGATGAATGCTTGGAGTGGCAGCTGGCGTCAAACCACCATATTGTTACT
CTACTCGATTGTGCGTTCCCGCCATTACTCAAAGAAGTCTCTTCTCCACCAACTACATTGTTTGTTAAAGGGGACGCTCG
ATCTTTGAGCACCCCACAGATAGCCATGGTAGGCAGTCGAAACGCCAGCATTGAAGGGCTACAAACAGCGAGGGCGTTTG
CCAAAGATTTATCCGCAAATGGGTTAGTGGTCACCAGTGGTTTGGCGCTCGGTGTGGATGGGCACGCTCACGATGGTGCG
TTGGAGGGAGGTGGTCAAACTGTTGCTGTGTTGGGCTCGGGACTCGACTGCATTTACCCGGCTCGGCACAGAAAGCTAGC
ACAAAGGATTATTGAGCAAGGCGCGCTCGTTTCTGAATTTCGACCCAACACAAAACCCAGACCAGAGCACTTCCCGCGCC
GCAATCGTATTATTAGTGGATTGTCGGTTGGCGTTTTTGTTGTCGAAGCTGCCGAACGCAGCGGGTCGTTGATAACAGCG
CGATACGCAGCAGAGCAAGGTCGCGATGTTTTTGCACTGCCCGGCTCAATTCACAACCCCAATTCTAGAGGGGGGAATGC
ACTCATTAAGTCTGGTGCCTGCTTAGTCCAATCGTCCGAAGATATTCTCCAAGAAGTAGAAAATTTAGTTTCTTGGTCGT
TTTCCCAACAAACATCTATATTTAGTGAAGAAGCCTCGCAAGAAGAATTGCCATTTCCTGAACTAATGGCTAACGTAGGG
TTAGAAGCAACACCCGTTGATATTCTTGCAGAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTACTGGAGCT
TGAGCTTTCAGGGTATGTTGTTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-277)

DprA winged helix domain (DprA_WH)

(314-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.738

99.18

0.642
  dprA Vibrio cholerae strain A1552

59.569

100

0.604
  dprA Glaesserella parasuis strain SC1401

46.486

100

0.47
  dprA Legionella pneumophila strain ERS1305867

45.429

98.634

0.448
  dprA Neisseria meningitidis strain C311

38.596

100

0.421
  dprA Neisseria meningitidis MC58

38.596

100

0.421
  dprA Neisseria gonorrhoeae strain FA1090

38.035

100

0.413
  dprA Haemophilus influenzae Rd KW20

44.345

91.803

0.407
  dprA Neisseria gonorrhoeae MS11

37.531

100

0.407
  dprA Acinetobacter baylyi ADP1

40.597

91.53

0.372

Multiple sequence alignment