Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R4Z09_RS28800 Genome accession   NZ_CP137640
Coordinates   5808998..5809144 (-) Length   48 a.a.
NCBI ID   WP_338453385.1    Uniprot ID   -
Organism   Niallia oryzisoli strain DSM 29761     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5803998..5814144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4Z09_RS28785 (R4Z09_28785) - 5806385..5806612 (+) 228 WP_338450086.1 hypothetical protein -
  R4Z09_RS28790 (R4Z09_28790) - 5806691..5807188 (-) 498 WP_338453384.1 DoxX family protein -
  R4Z09_RS28795 (R4Z09_28795) - 5807587..5808888 (-) 1302 WP_338450087.1 glycerophosphodiester phosphodiesterase family protein -
  R4Z09_RS28800 (R4Z09_28800) comM 5808998..5809144 (-) 147 WP_338453385.1 ATP-binding protein Machinery gene
  R4Z09_RS28805 (R4Z09_28805) - 5809411..5810526 (+) 1116 WP_338450088.1 acyltransferase -
  R4Z09_RS28810 (R4Z09_28810) - 5810951..5811910 (+) 960 WP_338450089.1 DUF4097 family beta strand repeat-containing protein -
  R4Z09_RS28815 (R4Z09_28815) - 5812359..5813552 (+) 1194 WP_338450090.1 glycerophosphodiester phosphodiesterase family protein -

Sequence

Protein


Download         Length: 48 a.a.        Molecular weight: 5515.47 Da        Isoelectric Point: 4.3110

>NTDB_id=899681 R4Z09_RS28800 WP_338453385.1 5808998..5809144(-) (comM) [Niallia oryzisoli strain DSM 29761]
MFIIGGGTTPKPGENSLVHRCVLFLDEMAEFLKKTLDMFYLEEGEMYI

Nucleotide


Download         Length: 147 bp        

>NTDB_id=899681 R4Z09_RS28800 WP_338453385.1 5808998..5809144(-) (comM) [Niallia oryzisoli strain DSM 29761]
ATTTTCATTATAGGCGGCGGAACCACGCCAAAACCCGGTGAGAACTCACTCGTCCATCGATGTGTCTTGTTTCTCGATGA
GATGGCAGAGTTCCTGAAGAAAACATTAGATATGTTTTATCTTGAAGAGGGGGAGATGTATATCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

56.25

100

0.563
  comM Glaesserella parasuis strain SC1401

56.25

100

0.563
  comM Vibrio cholerae strain A1552

56.25

100

0.563
  comM Vibrio campbellii strain DS40M4

54.167

100

0.542
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

50

100

0.5
  comM Legionella pneumophila str. Paris

50

100

0.5
  comM Legionella pneumophila strain ERS1305867

50

100

0.5