Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   R4701_RS02600 Genome accession   NZ_CP137114
Coordinates   518967..519773 (+) Length   268 a.a.
NCBI ID   WP_317805977.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P3054     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 513967..524773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS02560 - 514429..514812 (-) 384 WP_000877381.1 hypothetical protein -
  R4701_RS02565 - 515441..515799 (-) 359 Protein_509 immunity protein -
  R4701_RS02570 - 516280..516399 (-) 120 WP_000346296.1 PncF family bacteriocin immunity protein -
  R4701_RS02575 cipB 516503..516652 (-) 150 WP_001809846.1 bacteriocin-like peptide BlpO Regulator
  R4701_RS02580 blpK 516896..517144 (-) 249 WP_000379965.1 bacteriocin-like peptide BlpK -
  R4701_RS02585 blpJ 517213..517482 (-) 270 WP_001093250.1 bacteriocin-like peptide BlpJ -
  R4701_RS02590 blpI 517949..518146 (-) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  R4701_RS02595 comA/nlmT 518435..519022 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  R4701_RS02600 comA/nlmT 518967..519773 (+) 807 WP_317805977.1 ABC transporter transmembrane domain-containing protein Regulator
  R4701_RS02605 comA/nlmT 519810..520592 (+) 783 WP_317805978.1 ATP-binding cassette domain-containing protein Regulator
  R4701_RS02610 - 520603..521964 (+) 1362 WP_001069085.1 bacteriocin secretion accessory protein -
  R4701_RS02615 blpC 522021..522176 (+) 156 WP_000358810.1 quorum-sensing system pheromone BlpC -
  R4701_RS02620 - 522221..523561 (-) 1341 WP_317805979.1 sensor histidine kinase -
  R4701_RS02625 comE/blpR 523575..524312 (-) 738 WP_001219121.1 response regulator transcription factor Regulator
  R4701_RS02630 - 524317..524655 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30357.70 Da        Isoelectric Point: 4.9861

>NTDB_id=896157 R4701_RS02600 WP_317805977.1 518967..519773(+) (comA/nlmT) [Streptococcus pneumoniae strain 15P3054]
MVTIINIGGSYYLQGILDEYIPNQMKSTLGIISVGLIITYILQQVMSFSRDYLLTVLSQRLSIDVILSYIRHIFELPMSF
FATRRTGEIISRFTDANSIIDALASTILSLFLDVSILILVGGVLLAQNPNLFLLSLLSIPIYMFIIFSFMKPFEKMNHDV
MQSNSMVSSAIIEDINGIETIKSLTSEENRYQNIDSEFVDYLEKSFKLSKYSILQTSLKQGTKLVLNILILWFGAQLVMS
SKISIGQLITFNTLFSYFTTPMENIINL

Nucleotide


Download         Length: 807 bp        

>NTDB_id=896157 R4701_RS02600 WP_317805977.1 518967..519773(+) (comA/nlmT) [Streptococcus pneumoniae strain 15P3054]
TTGGTCACTATTATCAATATAGGTGGTTCTTACTATCTCCAAGGAATCTTGGATGAATACATTCCAAATCAGATGAAATC
AACTTTAGGAATCATCTCAGTTGGTCTGATTATCACCTATATCCTCCAACAAGTCATGAGCTTTTCCAGAGATTATCTCC
TAACCGTTCTGAGCCAGAGATTAAGCATTGATGTGATTTTATCCTATATTCGCCATATTTTTGAACTTCCCATGTCTTTC
TTTGCGACACGTCGTACAGGAGAAATCATTTCACGGTTCACAGATGCTAACTCTATTATAGATGCCTTGGCTTCTACCAT
TCTTTCTCTTTTTCTGGATGTTTCTATTCTGATTCTTGTAGGGGGCGTCTTACTGGCACAAAACCCTAATCTCTTCCTCC
TTTCTCTTCTTTCCATTCCTATATACATGTTCATCATCTTTTCTTTTATGAAACCTTTTGAAAAAATGAACCATGATGTC
ATGCAAAGTAATTCTATGGTTAGCTCTGCCATTATCGAAGATATCAACGGGATTGAAACTATAAAGTCGCTCACGAGTGA
AGAAAATCGCTATCAAAATATAGACAGCGAATTTGTAGATTATTTGGAAAAATCCTTTAAGCTCAGTAAATATTCTATTT
TACAAACGAGTTTAAAGCAGGGAACAAAATTAGTTCTGAATATCCTTATCCTATGGTTTGGCGCTCAATTAGTCATGTCG
AGTAAAATTTCTATCGGTCAGCTGATTACCTTTAACACACTTTTTTCTTACTTTACAACTCCTATGGAAAATATTATCAA
CCTCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

75.746

100

0.757
  comA Streptococcus gordonii str. Challis substr. CH1

69.403

100

0.694
  comA Streptococcus pneumoniae Rx1

69.03

100

0.69
  comA Streptococcus pneumoniae D39

69.03

100

0.69
  comA Streptococcus mitis NCTC 12261

69.03

100

0.69
  comA Streptococcus pneumoniae R6

69.03

100

0.69
  comA Streptococcus mitis SK321

69.03

100

0.69
  comA Streptococcus pneumoniae TIGR4

68.657

100

0.687