Detailed information NTG0893520

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: RJD36_RS00705
• Genome accession: NZ_CP136943
• Coordinates: 104187..104618 (+)
• Length: 143 a.a.
• NCBI ID: WP_003062922.1
• Uniprot ID: A0AAW6YJ77
• Organism: Streptococcus pasteurianus strain WUSP082
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99187..109618

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RJD36_RS00685 (RJD36_00685)	-	101569..101931 (+)	363	WP_003062916.1	DUF1033 family protein	-
RJD36_RS00690 (RJD36_00690)	comYA	102002..102943 (+)	942	WP_003062917.1	competence type IV pilus ATPase ComGA	Machinery gene
RJD36_RS00695 (RJD36_00695)	comYB	102867..103910 (+)	1044	WP_003062919.1	competence type IV pilus assembly protein ComGB	Machinery gene
RJD36_RS00700 (RJD36_00700)	comYC	103910..104203 (+)	294	WP_003062921.1	competence type IV pilus major pilin ComGC	Machinery gene
RJD36_RS00705 (RJD36_00705)	comYD	104187..104618 (+)	432	WP_003062922.1	competence type IV pilus minor pilin ComGD	Machinery gene
RJD36_RS00710 (RJD36_00710)	comGE	104572..104865 (+)	294	WP_080543606.1	competence type IV pilus minor pilin ComGE	-
RJD36_RS00715 (RJD36_00715)	comYF	104849..105286 (+)	438	WP_041974065.1	competence type IV pilus minor pilin ComGF	Machinery gene
RJD36_RS00720 (RJD36_00720)	comYG	105258..105590 (+)	333	WP_003062925.1	competence type IV pilus minor pilin ComGG	Machinery gene
RJD36_RS00725 (RJD36_00725)	comYH	105645..106616 (+)	972	WP_003062926.1	class I SAM-dependent methyltransferase	Machinery gene
RJD36_RS00730 (RJD36_00730)	-	106654..107853 (+)	1200	WP_003062927.1	acetate kinase	-
RJD36_RS00735 (RJD36_00735)	-	108014..108214 (+)	201	WP_013851401.1	helix-turn-helix transcriptional regulator	-
RJD36_RS00740 (RJD36_00740)	-	108224..108433 (+)	210	WP_003062929.1	hypothetical protein	-
RJD36_RS00745 (RJD36_00745)	-	108446..108898 (+)	453	WP_003062930.1	hypothetical protein	-
RJD36_RS00750 (RJD36_00750)	-	108910..109548 (+)	639	WP_003062931.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 15989.38 Da
• Isoelectric Point: 8.9601

>NTDB_id=893520 RJD36_RS00705 WP_003062922.1 104187..104618(+) (comYD) [Streptococcus pasteurianus strain WUSP082]
MKLKNKTVSAFTLLESLLTLGIACFIIMMLSGSLNGIFQNVEEKIFFLSFENLYCDTQKLANARQQSFTLTVSQEEVSTD
FSAVKLPPSVKVDKTYQVNFDKAGGNSSLAKLAFQTSDKEFNYQLYLGSGKYKKTETKSLHTP

Nucleotide

• Length: 432 bp

>NTDB_id=893520 RJD36_RS00705 WP_003062922.1 104187..104618(+) (comYD) [Streptococcus pasteurianus strain WUSP082]
ATGAAGCTAAAAAATAAAACAGTTTCAGCTTTTACCCTTTTAGAAAGTTTATTAACACTAGGAATTGCCTGTTTTATTAT
CATGATGTTGTCAGGCTCTTTGAATGGTATTTTTCAAAATGTAGAAGAAAAGATTTTCTTTTTATCGTTTGAAAATCTCT
ATTGTGACACGCAAAAATTAGCTAATGCTAGGCAACAAAGTTTTACGTTGACTGTTTCGCAAGAGGAAGTATCTACTGAT
TTCTCAGCGGTAAAACTCCCTCCATCGGTCAAAGTTGATAAAACTTATCAAGTCAATTTTGACAAAGCAGGAGGTAATTC
GTCCTTGGCAAAATTAGCCTTTCAAACGTCAGATAAAGAGTTCAACTATCAATTATATTTAGGGAGTGGTAAATATAAAA
AGACAGAAACTAAAAGCTTACATACTCCTTGA

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	53.435	91.608	0.49
comYD	Streptococcus mutans UA159	53.435	91.608	0.49
comGD/cglD	Streptococcus pneumoniae D39	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae Rx1	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae TIGR4	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis NCTC 12261	46.212	92.308	0.427
comGD/cglD	Streptococcus pneumoniae R6	46.212	92.308	0.427
comGD/cglD	Streptococcus mitis SK321	45.455	92.308	0.42
comYD	Streptococcus gordonii str. Challis substr. CH1	43.704	94.406	0.413