Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU42_RS00265 Genome accession   NZ_AP024905
Coordinates   54548..55705 (+) Length   385 a.a.
NCBI ID   WP_077335578.1    Uniprot ID   A0A1R4LK18
Organism   Vibrio ruber strain LMG 23124     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 49548..60705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU42_RS00245 trkA 50079..51455 (-) 1377 WP_077335572.1 Trk system potassium transporter TrkA -
  OCU42_RS00250 rsmB 51535..52821 (-) 1287 WP_077335607.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU42_RS00255 fmt 52873..53838 (-) 966 WP_077335574.1 methionyl-tRNA formyltransferase -
  OCU42_RS00260 def 53850..54371 (-) 522 WP_077335576.1 peptide deformylase -
  OCU42_RS00265 dprA 54548..55705 (+) 1158 WP_077335578.1 DNA-processing protein DprA Machinery gene
  OCU42_RS00270 - 55711..56184 (+) 474 WP_027694359.1 DUF494 family protein -
  OCU42_RS00275 - 56195..56776 (+) 582 WP_077335580.1 type I DNA topoisomerase -
  OCU42_RS00280 - 56857..57987 (-) 1131 WP_077335582.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU42_RS00285 purE 57993..58478 (-) 486 WP_077335584.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU42_RS00290 - 58694..59251 (+) 558 WP_077335586.1 L-threonylcarbamoyladenylate synthase -
  OCU42_RS00295 hemF 59269..60183 (+) 915 WP_077335588.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41766.02 Da        Isoelectric Point: 7.1056

>NTDB_id=89330 OCU42_RS00265 WP_077335578.1 54548..55705(+) (dprA) [Vibrio ruber strain LMG 23124]
MHQSTSNVAENDRLSIWIKLSLTPRLGMQSLLKLLGKVSLEALSHYSAKEWLTVGLTPVQVSYLLSDAANQVAEDCLQWQ
IRGNHRHIVAYFSPDYPALLKEIPSPPPLLFVQGEPALLSVPQLAIVGSRYASMQGLQDAWHFANGIAQHQVAVTSGLAL
GIDGQAHQGALDGGGKTIAVLGAGLDRIYPARHRGLAERILEQQSGVLVSEFCPSTPPKATNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAVEQNRDVFVIPGAIHQSGYRGSNALIRDGACLVQNIEQILSEVGTLSAWIKQEKPKEKIQQNELF
PPLIDDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=89330 OCU42_RS00265 WP_077335578.1 54548..55705(+) (dprA) [Vibrio ruber strain LMG 23124]
ATGCATCAATCAACCTCTAATGTCGCTGAAAATGATCGATTATCGATCTGGATAAAGCTTAGCTTGACACCCCGTTTGGG
AATGCAATCGTTGCTAAAGCTGCTCGGGAAAGTATCGCTTGAGGCGTTATCTCATTATTCTGCAAAAGAGTGGCTTACTG
TCGGGCTCACACCGGTACAGGTCTCTTATCTGTTATCTGATGCAGCGAATCAGGTGGCTGAGGATTGCCTTCAATGGCAA
ATACGTGGCAATCATCGCCATATCGTGGCTTATTTTTCTCCGGATTATCCGGCGTTGCTGAAAGAAATTCCGTCTCCGCC
ACCGCTGCTGTTTGTGCAGGGAGAGCCGGCGCTGTTGTCCGTCCCACAGCTTGCCATTGTGGGGAGTCGCTATGCCAGTA
TGCAAGGATTGCAAGATGCATGGCATTTTGCGAATGGTATTGCTCAGCATCAAGTGGCAGTGACCAGTGGATTAGCGCTG
GGAATTGATGGACAAGCCCATCAAGGCGCTTTAGACGGTGGCGGCAAAACCATTGCGGTTTTAGGCGCTGGTTTGGATCG
CATCTATCCGGCTCGGCATCGGGGGCTGGCTGAGCGAATACTTGAACAGCAATCCGGTGTACTGGTGTCAGAATTTTGTC
CCTCAACGCCCCCGAAAGCAACGAACTTTCCTCGTCGAAACAGAATTATCAGTGGGTTATCTCTGGGAGTGCTGGTGATT
GAAGCCGCAGAAAAAAGCGGGTCATTAATTACGGCAAGATACGCTGTTGAGCAAAACCGGGATGTTTTTGTGATCCCGGG
CGCGATTCATCAGTCTGGTTATCGGGGAAGTAATGCACTAATTCGTGATGGCGCTTGCTTAGTTCAGAATATTGAACAGA
TACTCTCTGAAGTTGGTACGTTATCTGCTTGGATTAAGCAAGAGAAGCCAAAAGAGAAAATTCAGCAAAATGAGCTTTTT
CCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAAGCGACACCAGTTGATAT
TCTTGCAACACGTACCCATATACCAGTTCATGAAGTGATGAGACAGCTCCTAGAGTTGGAATTATCCGGGCATGTGATTG
CAGTTGCTGGTGGCTACATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(321-378)

DNA recombination-mediator protein A (DNA_processg_A)

(84-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R4LK18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

56.499

97.922

0.553
  dprA Vibrio campbellii strain DS40M4

56.085

98.182

0.551
  dprA Glaesserella parasuis strain SC1401

43.501

97.922

0.426
  dprA Legionella pneumophila strain ERS1305867

43.935

96.364

0.423
  dprA Haemophilus influenzae Rd KW20

43.478

89.61

0.39
  dprA Neisseria gonorrhoeae MS11

35.294

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.049

100

0.371
  dprA Neisseria meningitidis strain C311

35.5

100

0.369
  dprA Neisseria meningitidis MC58

35.5

100

0.369

Multiple sequence alignment