Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | R0137_RS07430 | Genome accession | NZ_CP136865 |
| Coordinates | 1689184..1690401 (-) | Length | 405 a.a. |
| NCBI ID | WP_407329748.1 | Uniprot ID | - |
| Organism | Congregibacter brevis strain IMCC45268 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1684184..1695401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R0137_RS07410 (R0137_07375) | argJ | 1685959..1687197 (+) | 1239 | WP_407329741.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| R0137_RS07415 (R0137_07380) | mutT | 1687204..1687635 (+) | 432 | WP_407329742.1 | 8-oxo-dGTP diphosphatase MutT | - |
| R0137_RS07420 (R0137_07385) | coaE | 1687632..1688252 (-) | 621 | WP_407329744.1 | dephospho-CoA kinase | - |
| R0137_RS07425 (R0137_07390) | pilD | 1688249..1689130 (-) | 882 | WP_407329746.1 | prepilin peptidase | Machinery gene |
| R0137_RS07430 (R0137_07395) | pilC | 1689184..1690401 (-) | 1218 | WP_407329748.1 | type II secretion system F family protein | Machinery gene |
| R0137_RS07435 (R0137_07400) | pilB | 1690458..1692179 (-) | 1722 | WP_407329749.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| R0137_RS07440 (R0137_07405) | - | 1692552..1693019 (+) | 468 | WP_407329751.1 | pilin | - |
| R0137_RS07445 (R0137_07410) | - | 1693147..1695066 (+) | 1920 | WP_407329752.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 43713.03 Da Isoelectric Point: 8.0247
>NTDB_id=893181 R0137_RS07430 WP_407329748.1 1689184..1690401(-) (pilC) [Congregibacter brevis strain IMCC45268]
MATTATSELFTWSGTDKNGRQTKGEINAPSQAMARAQLRQKGINPRSVRRKPKPLFSARKKPIKPADIAIFTRQMATMMK
AGVPLVQSFDIVGDGLENPSMKELVSGIKNDVSAGGGLALSLEKHPRHFDELFCSLVGAGESAGTLETMLDRVATYKEKT
EQLKAKIKKALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLGLSDFMQAWWFIIVIGIVATVYAFK
EARIRSKSFSDSIDRLMLKLPIFGGIVHDSVVARFSRTLATTFNAGVPLVDALESTAGAAGNAVYSEAILQIRDDVTTGS
TLYNSVKSTGLFPNMLLQMISIGEESGQLDEMLDKVATHYEEAVDNAVDSLSSLMEPMIMSILGVLVGGLMIAMYLPIFM
LGSVI
MATTATSELFTWSGTDKNGRQTKGEINAPSQAMARAQLRQKGINPRSVRRKPKPLFSARKKPIKPADIAIFTRQMATMMK
AGVPLVQSFDIVGDGLENPSMKELVSGIKNDVSAGGGLALSLEKHPRHFDELFCSLVGAGESAGTLETMLDRVATYKEKT
EQLKAKIKKALTYPTAVIVVALVVSGILLVKVVPQFAETFSSFGADLPAFTLMVLGLSDFMQAWWFIIVIGIVATVYAFK
EARIRSKSFSDSIDRLMLKLPIFGGIVHDSVVARFSRTLATTFNAGVPLVDALESTAGAAGNAVYSEAILQIRDDVTTGS
TLYNSVKSTGLFPNMLLQMISIGEESGQLDEMLDKVATHYEEAVDNAVDSLSSLMEPMIMSILGVLVGGLMIAMYLPIFM
LGSVI
Nucleotide
Download Length: 1218 bp
>NTDB_id=893181 R0137_RS07430 WP_407329748.1 1689184..1690401(-) (pilC) [Congregibacter brevis strain IMCC45268]
ATGGCGACGACGGCTACCAGCGAACTGTTTACTTGGAGCGGCACCGATAAAAACGGGCGCCAGACCAAGGGTGAGATTAA
CGCGCCGTCGCAAGCGATGGCGCGCGCTCAGCTGCGACAAAAGGGCATCAACCCACGCTCGGTGCGTAGAAAGCCGAAAC
CCCTCTTCAGCGCCAGGAAAAAACCCATTAAGCCAGCAGACATCGCCATCTTCACTCGCCAGATGGCGACCATGATGAAA
GCGGGCGTACCGCTTGTGCAGAGCTTTGATATCGTGGGCGACGGGCTGGAAAATCCCTCGATGAAAGAGCTCGTTAGCGG
CATCAAGAATGACGTTTCAGCGGGTGGCGGCCTTGCCCTTTCCCTAGAGAAGCATCCGAGACATTTTGACGAGCTATTTT
GCTCTCTGGTAGGTGCGGGAGAGTCCGCCGGTACACTTGAAACCATGCTCGACCGTGTGGCCACTTATAAAGAGAAAACC
GAGCAGTTAAAGGCAAAAATCAAAAAGGCTCTAACCTACCCAACCGCGGTCATCGTCGTCGCATTGGTCGTTTCGGGCAT
CCTGCTGGTCAAGGTTGTGCCGCAGTTTGCGGAGACATTTTCCAGCTTTGGGGCAGACTTGCCTGCGTTCACCCTGATGG
TTCTGGGCCTGTCAGATTTCATGCAAGCGTGGTGGTTTATTATTGTCATCGGCATCGTAGCCACAGTTTACGCATTTAAA
GAGGCGCGAATCCGCTCGAAGAGTTTCAGCGACTCCATCGATCGCCTAATGTTAAAGCTCCCTATTTTTGGGGGAATCGT
TCATGATTCTGTGGTCGCGCGTTTTTCCAGGACGCTGGCAACTACGTTTAACGCGGGTGTTCCTCTCGTAGACGCTCTGG
AATCCACAGCGGGCGCTGCAGGCAACGCGGTGTACAGCGAGGCTATTCTGCAAATTCGTGACGACGTTACTACCGGCTCC
ACACTCTACAACTCTGTAAAGAGCACGGGGTTGTTCCCCAACATGCTGCTGCAGATGATCTCCATCGGTGAGGAATCCGG
TCAGCTCGACGAAATGCTGGATAAAGTGGCTACTCACTATGAAGAAGCCGTGGACAATGCCGTAGATAGCCTCAGCTCCC
TGATGGAGCCAATGATCATGTCGATTCTGGGAGTGTTGGTCGGCGGCCTCATGATCGCTATGTACCTGCCAATCTTCATG
TTGGGATCCGTAATCTAA
ATGGCGACGACGGCTACCAGCGAACTGTTTACTTGGAGCGGCACCGATAAAAACGGGCGCCAGACCAAGGGTGAGATTAA
CGCGCCGTCGCAAGCGATGGCGCGCGCTCAGCTGCGACAAAAGGGCATCAACCCACGCTCGGTGCGTAGAAAGCCGAAAC
CCCTCTTCAGCGCCAGGAAAAAACCCATTAAGCCAGCAGACATCGCCATCTTCACTCGCCAGATGGCGACCATGATGAAA
GCGGGCGTACCGCTTGTGCAGAGCTTTGATATCGTGGGCGACGGGCTGGAAAATCCCTCGATGAAAGAGCTCGTTAGCGG
CATCAAGAATGACGTTTCAGCGGGTGGCGGCCTTGCCCTTTCCCTAGAGAAGCATCCGAGACATTTTGACGAGCTATTTT
GCTCTCTGGTAGGTGCGGGAGAGTCCGCCGGTACACTTGAAACCATGCTCGACCGTGTGGCCACTTATAAAGAGAAAACC
GAGCAGTTAAAGGCAAAAATCAAAAAGGCTCTAACCTACCCAACCGCGGTCATCGTCGTCGCATTGGTCGTTTCGGGCAT
CCTGCTGGTCAAGGTTGTGCCGCAGTTTGCGGAGACATTTTCCAGCTTTGGGGCAGACTTGCCTGCGTTCACCCTGATGG
TTCTGGGCCTGTCAGATTTCATGCAAGCGTGGTGGTTTATTATTGTCATCGGCATCGTAGCCACAGTTTACGCATTTAAA
GAGGCGCGAATCCGCTCGAAGAGTTTCAGCGACTCCATCGATCGCCTAATGTTAAAGCTCCCTATTTTTGGGGGAATCGT
TCATGATTCTGTGGTCGCGCGTTTTTCCAGGACGCTGGCAACTACGTTTAACGCGGGTGTTCCTCTCGTAGACGCTCTGG
AATCCACAGCGGGCGCTGCAGGCAACGCGGTGTACAGCGAGGCTATTCTGCAAATTCGTGACGACGTTACTACCGGCTCC
ACACTCTACAACTCTGTAAAGAGCACGGGGTTGTTCCCCAACATGCTGCTGCAGATGATCTCCATCGGTGAGGAATCCGG
TCAGCTCGACGAAATGCTGGATAAAGTGGCTACTCACTATGAAGAAGCCGTGGACAATGCCGTAGATAGCCTCAGCTCCC
TGATGGAGCCAATGATCATGTCGATTCTGGGAGTGTTGGTCGGCGGCCTCATGATCGCTATGTACCTGCCAATCTTCATG
TTGGGATCCGTAATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
61.654 |
98.519 |
0.607 |
| pilC | Acinetobacter baumannii D1279779 |
59.95 |
98.025 |
0.588 |
| pilC | Acinetobacter baylyi ADP1 |
58.561 |
99.506 |
0.583 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.556 |
97.778 |
0.543 |
| pilG | Neisseria gonorrhoeae MS11 |
45.547 |
97.037 |
0.442 |
| pilG | Neisseria meningitidis 44/76-A |
45.547 |
97.037 |
0.442 |
| pilC | Vibrio cholerae strain A1552 |
42.929 |
97.778 |
0.42 |
| pilC | Vibrio campbellii strain DS40M4 |
41.414 |
97.778 |
0.405 |