Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   R0137_RS07425 Genome accession   NZ_CP136865
Coordinates   1688249..1689130 (-) Length   293 a.a.
NCBI ID   WP_407329746.1    Uniprot ID   -
Organism   Congregibacter brevis strain IMCC45268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683249..1694130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R0137_RS07410 (R0137_07375) argJ 1685959..1687197 (+) 1239 WP_407329741.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  R0137_RS07415 (R0137_07380) mutT 1687204..1687635 (+) 432 WP_407329742.1 8-oxo-dGTP diphosphatase MutT -
  R0137_RS07420 (R0137_07385) coaE 1687632..1688252 (-) 621 WP_407329744.1 dephospho-CoA kinase -
  R0137_RS07425 (R0137_07390) pilD 1688249..1689130 (-) 882 WP_407329746.1 prepilin peptidase Machinery gene
  R0137_RS07430 (R0137_07395) pilC 1689184..1690401 (-) 1218 WP_407329748.1 type II secretion system F family protein Machinery gene
  R0137_RS07435 (R0137_07400) pilB 1690458..1692179 (-) 1722 WP_407329749.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R0137_RS07440 (R0137_07405) - 1692552..1693019 (+) 468 WP_407329751.1 pilin -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 31885.63 Da        Isoelectric Point: 4.8144

>NTDB_id=893180 R0137_RS07425 WP_407329746.1 1688249..1689130(-) (pilD) [Congregibacter brevis strain IMCC45268]
MSQSPMLSEFLIEYPAYFYLLVGSLGLLVGSFLNVVILRLPEMMQREWRRDCRALLEIDDGQEATEERFSLAFPGSHCPH
CQHAIKPWENIPVISFIALRGRCSSCGTSIGWRYPLVELTSAVASLVVAFHIGVEPALLAYLLFTWTLIALAVIDIDTQL
LPDDVTLPLLWAGLLFNVFWGPVLPVDAIIGAAAGYLLLWTIYWAFKLATGKEGMGYGDFKLLAALGAWLGWQSLPIIIL
LSSAVGAVLGILIIAVQGKDRSSPLPFGPYLAAAGWISLLWGGALSAILLGSP

Nucleotide


Download         Length: 882 bp        

>NTDB_id=893180 R0137_RS07425 WP_407329746.1 1688249..1689130(-) (pilD) [Congregibacter brevis strain IMCC45268]
ATGAGCCAATCTCCCATGCTCAGTGAGTTTTTGATCGAGTACCCCGCGTATTTTTACTTGTTGGTCGGGTCGCTTGGTCT
TTTGGTTGGCAGCTTTCTGAACGTAGTCATTCTTCGACTACCAGAAATGATGCAAAGGGAGTGGCGAAGAGATTGTCGCG
CTCTGCTTGAGATTGATGACGGCCAAGAGGCGACTGAAGAAAGGTTCTCGCTGGCCTTCCCGGGCTCCCATTGTCCTCAC
TGCCAGCACGCGATCAAACCCTGGGAGAACATCCCCGTTATCAGTTTTATAGCACTCCGTGGCAGATGCTCGAGCTGCGG
GACAAGTATCGGCTGGCGATACCCGCTAGTAGAGCTAACCAGCGCGGTCGCCTCGCTGGTCGTTGCGTTTCACATCGGTG
TAGAACCCGCACTGCTCGCCTACCTGCTGTTTACCTGGACGCTTATAGCGCTGGCCGTCATTGATATTGATACGCAACTA
TTGCCCGACGATGTGACGCTACCGCTGTTATGGGCCGGACTTTTGTTCAACGTGTTTTGGGGGCCCGTATTGCCGGTTGA
CGCCATCATAGGCGCCGCCGCGGGCTATCTTTTACTGTGGACTATTTATTGGGCCTTCAAACTCGCCACTGGTAAGGAGG
GCATGGGTTACGGTGACTTTAAACTGCTGGCCGCTCTCGGCGCATGGCTTGGATGGCAAAGCCTGCCGATCATCATTCTG
CTTTCATCTGCAGTAGGCGCTGTCCTGGGAATTCTCATCATTGCTGTGCAAGGGAAAGATCGCTCTAGCCCCCTACCGTT
TGGTCCCTATCTAGCTGCGGCGGGATGGATAAGTCTGCTCTGGGGCGGCGCACTCTCAGCAATACTCCTTGGCAGCCCAT
GA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(143-251)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

54.909

93.857

0.515
  pilD Vibrio campbellii strain DS40M4

52.727

93.857

0.495
  pilD Acinetobacter baumannii D1279779

47.872

96.246

0.461
  pilD Acinetobacter nosocomialis M2

46.809

96.246

0.451
  pilD Neisseria gonorrhoeae MS11

45.848

94.539

0.433