Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R1Z03_RS02305 Genome accession   NZ_CP136797
Coordinates   477015..478232 (-) Length   405 a.a.
NCBI ID   WP_272565514.1    Uniprot ID   -
Organism   Acidovorax sp. BLS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472015..483232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1Z03_RS02275 (R1Z03_02275) - 473063..473935 (+) 873 WP_284408205.1 ATP-binding protein -
  R1Z03_RS02280 (R1Z03_02280) - 473928..474383 (+) 456 WP_317356515.1 NUDIX domain-containing protein -
  R1Z03_RS02285 (R1Z03_02285) - 474424..474672 (-) 249 WP_317356518.1 DNA gyrase inhibitor YacG -
  R1Z03_RS02290 (R1Z03_02290) zapD 474686..475441 (-) 756 WP_272565520.1 cell division protein ZapD -
  R1Z03_RS02295 (R1Z03_02295) coaE 475506..476126 (-) 621 WP_317356523.1 dephospho-CoA kinase -
  R1Z03_RS02300 (R1Z03_02300) - 476131..477015 (-) 885 WP_317356525.1 A24 family peptidase -
  R1Z03_RS02305 (R1Z03_02305) pilC 477015..478232 (-) 1218 WP_272565514.1 type II secretion system F family protein Machinery gene
  R1Z03_RS02310 (R1Z03_02310) pilB 478253..479983 (-) 1731 WP_284405479.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R1Z03_RS02320 (R1Z03_02320) - 480194..481123 (-) 930 WP_317360211.1 polyprenyl synthetase family protein -
  R1Z03_RS02325 (R1Z03_02325) rplU 481380..481691 (+) 312 WP_317356529.1 50S ribosomal protein L21 -
  R1Z03_RS02330 (R1Z03_02330) rpmA 481706..481963 (+) 258 WP_272548923.1 50S ribosomal protein L27 -
  R1Z03_RS02335 (R1Z03_02335) cgtA 482087..483157 (+) 1071 WP_317356534.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44541.51 Da        Isoelectric Point: 9.3918

>NTDB_id=892659 R1Z03_RS02305 WP_272565514.1 477015..478232(-) (pilC) [Acidovorax sp. BLS4]
MATAASRDIKDFVFEWEGKDRSGKIVRGEVRAVGENQVQATLRRQGVLPTKIKKRRMRSGKKIKPKDIALFTRQMATMMK
AGVPLLQSFDIVGRGNTNASVTKLLNDIRSDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLAMYMEKT
EAIKSKIKSALMYPISVVIVAFVVVTVIMIFVIPAFKEVFTSFGAELPAPTLLVMAMSEVFVKWWWLIFGVLGGGFYFFM
QAWRRSEKVQMFMDRLLLRLPVFGSLIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYALATERIQQEVSTGT
SLTAAMGNANVFPSMVIQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=892659 R1Z03_RS02305 WP_272565514.1 477015..478232(-) (pilC) [Acidovorax sp. BLS4]
ATGGCAACCGCCGCATCGAGGGATATCAAGGACTTCGTCTTTGAATGGGAGGGCAAGGATCGCAGTGGAAAGATTGTCCG
CGGGGAAGTGCGCGCCGTAGGTGAAAACCAGGTCCAGGCGACCTTGCGCAGACAAGGTGTGCTGCCTACCAAGATCAAGA
AGCGGCGCATGCGTTCGGGCAAGAAGATCAAGCCCAAGGACATCGCATTGTTCACGCGCCAGATGGCCACCATGATGAAG
GCTGGCGTGCCACTCTTGCAATCCTTCGATATTGTGGGCCGGGGCAATACCAATGCCAGCGTCACGAAATTGCTCAACGA
CATTCGAAGTGACGTGGAAACCGGGACGTCGCTGAATGCGGCCTTCCGCAAGTACCCCATGTACTTCGACAGCCTTTATT
GCAACCTCGTCGAAGCCGGCGAGGCCGCGGGTATCTTGGAGGCGCTGCTGGACCGGCTTGCCATGTACATGGAAAAGACC
GAGGCCATCAAATCGAAGATCAAATCGGCATTGATGTACCCCATTTCGGTGGTGATCGTTGCATTCGTCGTGGTCACGGT
GATCATGATCTTTGTGATCCCCGCATTCAAGGAAGTATTCACCTCCTTTGGCGCTGAACTGCCGGCACCTACGCTCCTCG
TGATGGCCATGAGCGAGGTCTTCGTCAAATGGTGGTGGCTGATTTTTGGCGTATTGGGGGGCGGATTTTATTTCTTCATG
CAGGCCTGGCGCCGCAGCGAAAAAGTACAGATGTTCATGGACCGTCTGTTGCTGCGGCTTCCGGTGTTCGGGTCCTTGAT
CGATAAATCATGTGTTGCTCGCTGGACCCGGACGCTGTCCACCATGTTCGCCGCAGGGGTTCCTCTGGTTGAAGCCTTGG
ATTCGGTGGGCGGCGCCTCCGGCAATTCCGTGTATGCCCTCGCGACGGAAAGAATCCAGCAGGAAGTCTCGACCGGGACG
AGCTTGACGGCTGCCATGGGCAACGCCAACGTGTTCCCGTCCATGGTGATCCAGATGTGCGCCATTGGCGAAGAATCCGG
CTCCATCGACCACATGCTGGGCAAAGCCGCCGACTTCTACGAGGCGGAAGTGGATGAAATGGTCGCGGGGCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGCACCATCATTGGGGGCATCGTGGTTTCGATGTATCTGCCGATCTTCAAA
CTGGGTCAAGTCGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

52.273

97.778

0.511
  pilG Neisseria meningitidis 44/76-A

52.02

97.778

0.509
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Legionella pneumophila strain ERS1305867

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

39.798

98.025

0.39
  pilC Vibrio campbellii strain DS40M4

39.25

98.765

0.388
  pilC Thermus thermophilus HB27

37.717

99.506

0.375