Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV11_RS15185 Genome accession   NZ_AP024895
Coordinates   3319131..3320447 (-) Length   438 a.a.
NCBI ID   WP_261893862.1    Uniprot ID   -
Organism   Vibrio porteresiae DSM 19223 strain MSSRF30     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3314131..3325447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV11_RS15165 - 3314867..3315688 (-) 822 WP_261893858.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCV11_RS15170 - 3315759..3317270 (-) 1512 WP_261893859.1 SPOR domain-containing protein -
  OCV11_RS15175 aroB 3317320..3318399 (-) 1080 WP_261893860.1 3-dehydroquinate synthase -
  OCV11_RS15180 aroK 3318426..3318944 (-) 519 WP_261893861.1 shikimate kinase AroK -
  OCV11_RS15185 pilQ 3319131..3320447 (-) 1317 WP_261893862.1 type IV pilus secretin PilQ Machinery gene
  OCV11_RS15190 - 3320447..3320902 (-) 456 WP_261893863.1 hypothetical protein -
  OCV11_RS15195 pilO 3320905..3321459 (-) 555 WP_261893864.1 type 4a pilus biogenesis protein PilO -
  OCV11_RS15200 - 3321459..3322013 (-) 555 WP_261893865.1 PilN domain-containing protein -
  OCV11_RS15205 pilM 3321997..3322941 (-) 945 WP_261893867.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 48067.33 Da        Isoelectric Point: 6.1717

>NTDB_id=89260 OCV11_RS15185 WP_261893862.1 3319131..3320447(-) (pilQ) [Vibrio porteresiae DSM 19223 strain MSSRF30]
MKLNVLFYFLSKFILISLPLWGITTASLTLAAQGADERISLQLQDAEVRRLLVLLAQQRKMNLVMSDSVTGNVSVSLDNV
SWSKALHVILKMKGLAYKEEGEVLWIAPREELQGMELEQQQSRLAKQPLSYLRVPIHYAQANDIAEMVSNSGLLSKRGSL
QIDKRTNALLIKETSEGLKELQGFIASLDVPMKQVLIEARIVTMSQGNLDELGVRWGIFQDNQTKLSGSLEGLQGGETDD
IIGQLNVRLPSASVRASSIAFQVAKLGTDTLLDLELSALQSESKAEIISSPRLVTTNKKPAYIEQGTEIPYLEAASSGAT
SVTFRKAVLSLKVTPQITPDNRLILDLNVTQDRPGDAVSSGTGDAVTIQTQRIGTQVLVNDGETVVLGGIYQYSTVHHVD
KVPLLGDLPWIGSLFRRTYQQSGKNELLIFVTPKVFIQ

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=89260 OCV11_RS15185 WP_261893862.1 3319131..3320447(-) (pilQ) [Vibrio porteresiae DSM 19223 strain MSSRF30]
ATGAAGCTTAACGTTCTATTTTATTTTTTATCCAAGTTTATCTTAATCAGCTTGCCTCTTTGGGGCATAACCACTGCTTC
ATTGACATTGGCAGCGCAGGGGGCTGATGAGCGTATTTCTTTACAGTTACAAGATGCAGAAGTGCGGCGTTTGTTAGTGT
TGTTAGCTCAGCAACGTAAAATGAATTTGGTCATGTCAGATAGCGTCACTGGTAACGTATCGGTGAGTTTAGACAATGTC
AGTTGGTCCAAAGCACTGCATGTCATTCTCAAAATGAAAGGCCTGGCTTATAAAGAAGAGGGCGAAGTGTTGTGGATTGC
TCCGCGAGAAGAACTGCAAGGTATGGAACTCGAGCAGCAGCAAAGTCGTTTAGCCAAGCAGCCGCTGAGCTATTTACGAG
TGCCAATACATTATGCGCAAGCCAATGATATTGCAGAGATGGTCAGCAATAGCGGCCTGCTATCAAAGCGAGGCTCGCTG
CAAATTGATAAACGTACTAACGCTTTATTGATTAAGGAAACTAGCGAGGGATTAAAAGAGCTACAAGGGTTTATTGCTTC
GCTGGACGTCCCCATGAAGCAAGTGTTGATTGAAGCGCGCATTGTTACTATGAGCCAAGGTAACCTTGATGAATTGGGGG
TTCGTTGGGGAATATTCCAAGATAATCAAACTAAATTAAGTGGCTCACTTGAAGGTCTGCAAGGTGGTGAAACCGATGAC
ATTATCGGGCAACTTAATGTTCGTCTTCCTTCGGCATCTGTTCGAGCTAGTAGTATCGCATTTCAAGTGGCTAAGTTAGG
GACTGATACTTTGCTGGATTTGGAGCTTTCGGCGCTGCAAAGTGAGTCGAAGGCGGAAATTATTTCCAGTCCTCGTTTGG
TCACAACTAATAAGAAACCTGCCTATATTGAGCAAGGGACTGAAATTCCCTATTTGGAAGCTGCATCAAGTGGAGCTACC
TCGGTAACATTTCGCAAAGCGGTACTAAGTTTAAAAGTGACACCACAAATCACTCCAGATAATCGTCTGATACTTGATCT
CAATGTCACCCAAGATCGGCCCGGTGATGCAGTTAGTTCAGGAACAGGGGATGCTGTCACGATTCAAACACAAAGAATTG
GCACGCAAGTGCTGGTTAATGATGGGGAAACAGTGGTGTTAGGCGGGATTTATCAATACAGTACCGTCCATCATGTTGAT
AAAGTTCCACTGCTAGGCGATTTACCATGGATTGGTTCATTATTTCGCAGAACTTACCAACAAAGTGGCAAAAATGAGCT
GCTTATATTCGTGACTCCTAAAGTGTTCATTCAATGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(134-194)

Bacterial type II and III secretion system protein (Secretin)

(278-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

59.67

96.804

0.578
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

60.145

94.521

0.568
  pilQ Vibrio cholerae strain A1552

60.145

94.521

0.568
  comQ Acinetobacter baylyi ADP1

40.315

100

0.409
  pilQ Legionella pneumophila strain ERS1305867

42.651

94.749

0.404
  pilQ Legionella pneumophila strain Lp02

42.651

94.749

0.404
  comE Haemophilus influenzae Rd KW20

39.954

100

0.4
  comE Haemophilus influenzae 86-028NP

39.041

100

0.39
  pilQ Pseudomonas aeruginosa PAK

39.906

97.26

0.388
  pilQ Acinetobacter baumannii D1279779

36.9

100

0.386
  pilQ Acinetobacter baumannii strain A118

36.9

100

0.386

Multiple sequence alignment