Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   R1T46_RS20920 Genome accession   NZ_CP136693
Coordinates   4500338..4502422 (-) Length   694 a.a.
NCBI ID   WP_317308347.1    Uniprot ID   -
Organism   Marinobacter salarius strain CI.11.F.A3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4495338..4507422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R1T46_RS20905 (R1T46_20905) - 4497127..4498524 (-) 1398 WP_317306918.1 AAA family ATPase -
  R1T46_RS20910 (R1T46_20910) aroB 4498554..4499648 (-) 1095 WP_278366461.1 3-dehydroquinate synthase -
  R1T46_RS20915 (R1T46_20915) aroK 4499641..4500207 (-) 567 WP_036203590.1 shikimate kinase AroK -
  R1T46_RS20920 (R1T46_20920) pilQ 4500338..4502422 (-) 2085 WP_317308347.1 type IV pilus secretin PilQ Machinery gene
  R1T46_RS20925 (R1T46_20925) - 4502488..4503036 (-) 549 WP_317306919.1 pilus assembly protein PilP -
  R1T46_RS20930 (R1T46_20930) - 4503039..4503650 (-) 612 WP_007154614.1 type 4a pilus biogenesis protein PilO -
  R1T46_RS20935 (R1T46_20935) - 4503650..4504213 (-) 564 WP_317306920.1 PilN domain-containing protein -
  R1T46_RS20940 (R1T46_20940) pilM 4504213..4505277 (-) 1065 WP_317306921.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 74176.90 Da        Isoelectric Point: 4.2956

>NTDB_id=892504 R1T46_RS20920 WP_317308347.1 4500338..4502422(-) (pilQ) [Marinobacter salarius strain CI.11.F.A3]
MFRKLNVYVGVIAFGLLSGLANAVTLEDVSFSSLSGDRVEVTLSFDGQPPEPTGYTIERPARIAVDLRDTNSGLDSRNIS
LGGGNAQSMTVVETKDRTRLIFNLAELAPYETVRTQNSLVVTIGSQGSGVAASGSTSSSTPMTTASGGQSVSSAGNDLAG
VDFRRGQNGEGRVIVDLGSANASVDLSELGGKIRLTMDGTSVPDNLRRRLDVTDFATPVTRVDTYMEDGNAVVEIRPEGN
YDYIAYQSGSQFTVSVERLTEEEAESRREEKFPYTGDKLSLNFQDIEVRSVLQLIADFTGLNLVASDTVSGSITLRLQNV
PWDQALDLILKTKGLDKRQIGNVLLVAPADEIAAREKLELETSKQIAELAPVRLDIIQVNYAKAADVVALIEADEELISS
RGFVSSDARTNTISVRETSEKLDEIRRLVSTWDVPVRQVSIEARIVRAQTNVAENLGVRWGGAAYDVRGDGSVISVGGSQ
GAVGEARDAANGNNNTITFPGALAVDLGVSGQGASSFAIGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQTAKIK
SGEEIPYQEAASSGATSVSFKEAALSLEVTPQITPDDKIIMDLVVNQDSRGEVTAGIPAINTNEVTTQVLVGNGETVVLG
GIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHIDERSELLIFITPKIIKSDLIQ

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=892504 R1T46_RS20920 WP_317308347.1 4500338..4502422(-) (pilQ) [Marinobacter salarius strain CI.11.F.A3]
ATGTTCAGAAAACTCAATGTATACGTCGGCGTGATTGCTTTTGGGTTGTTATCCGGCCTGGCCAATGCGGTCACGCTGGA
AGACGTGTCGTTTTCGTCGCTGTCCGGGGATCGGGTCGAGGTGACGCTGTCGTTTGACGGCCAGCCACCAGAACCGACCG
GGTATACGATCGAGCGACCTGCGAGGATCGCAGTGGACCTGCGGGACACGAACAGCGGCCTCGACAGTCGCAACATCTCG
CTCGGGGGCGGTAACGCCCAGAGCATGACGGTTGTCGAAACCAAGGATCGCACTCGCCTGATCTTCAACCTGGCAGAGCT
GGCTCCCTATGAGACGGTGCGTACCCAGAACAGCCTGGTCGTCACAATCGGCAGTCAGGGTAGTGGTGTCGCAGCGTCAG
GCTCGACTTCTTCCTCTACACCGATGACTACCGCATCGGGCGGACAGTCGGTCTCATCGGCAGGCAACGACCTGGCGGGA
GTCGATTTTAGGCGTGGGCAGAATGGCGAAGGACGCGTGATCGTGGATCTGGGTAGTGCCAATGCATCCGTGGATCTGTC
CGAGCTCGGGGGCAAGATTCGCTTGACGATGGACGGTACCAGTGTGCCGGATAATCTTCGTCGCCGCCTTGATGTTACCG
ATTTCGCGACACCGGTAACCCGGGTTGATACCTACATGGAAGATGGTAATGCGGTTGTGGAAATTCGTCCGGAAGGCAAC
TACGACTACATTGCCTACCAGTCCGGTTCGCAGTTTACCGTTAGCGTGGAAAGGCTGACAGAAGAGGAAGCTGAGTCTCG
TCGAGAGGAGAAGTTCCCGTACACCGGCGACAAGCTCTCTCTCAACTTCCAGGACATCGAAGTTCGTTCGGTATTGCAGT
TGATTGCCGACTTTACTGGTCTGAACCTTGTTGCCAGCGATACGGTCAGTGGCAGCATCACGCTGCGTTTGCAGAATGTG
CCCTGGGACCAGGCTCTGGACCTGATCCTTAAGACAAAGGGATTGGACAAGCGCCAGATTGGTAACGTACTGCTGGTTGC
GCCGGCTGACGAAATTGCCGCCCGTGAGAAGCTTGAGCTGGAGACGTCCAAGCAGATCGCTGAGCTTGCGCCGGTTCGTC
TGGATATCATTCAGGTGAATTATGCCAAAGCTGCAGACGTTGTTGCGCTGATCGAGGCGGATGAAGAATTGATCTCTTCC
CGGGGATTCGTATCTTCGGATGCGCGTACCAATACCATCAGTGTTCGTGAAACCTCGGAAAAGCTCGACGAAATTCGTCG
TCTGGTTTCGACGTGGGACGTTCCGGTTCGTCAGGTTTCCATTGAGGCCCGAATTGTAAGGGCGCAAACCAACGTTGCTG
AAAACCTCGGCGTTCGTTGGGGCGGTGCCGCCTATGATGTCAGGGGCGATGGTAGTGTTATCTCTGTCGGTGGCTCTCAG
GGGGCTGTTGGCGAGGCTCGTGATGCGGCCAATGGCAATAACAATACCATTACTTTCCCTGGTGCTCTGGCAGTTGATCT
TGGTGTCTCAGGGCAAGGCGCATCCTCTTTCGCTATTGGTTGGGGTAGTGACGACTTCCTTGTGGATCTAGAGCTTTCCG
CCCTGGAAAGTGACGGGCAGGCAGAAGTTGTCTCCCAACCTCGTGTGGTGACTGCTGATCGCCAGACTGCAAAAATCAAG
TCTGGTGAGGAGATTCCTTACCAAGAGGCTGCTTCCAGCGGCGCGACTTCCGTATCGTTCAAGGAAGCGGCACTGTCGCT
TGAAGTAACCCCTCAGATTACCCCGGATGACAAAATCATTATGGATCTGGTGGTTAATCAGGACTCTCGTGGCGAAGTAA
CCGCCGGTATTCCGGCTATCAACACTAATGAGGTAACGACGCAGGTGTTGGTTGGAAATGGCGAAACTGTGGTCTTGGGG
GGTATTTTCCAATCAGAAGTAGCGACCACCACGACCAAGACGCCTTTCTTGGGTGATATTCCTTATCTTGGCCGACTCTT
CAAGCGCACCGAGCATATCGATGAGCGTAGCGAACTGTTGATCTTCATCACACCGAAGATCATCAAGAGCGACCTGATTC
AGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(534-689)

AMIN domain (AMIN)

(36-123)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

51.23

99.568

0.51
  pilQ Acinetobacter baumannii strain A118

40.489

100

0.429
  pilQ Acinetobacter baumannii D1279779

40.489

100

0.429
  comQ Acinetobacter baylyi ADP1

40.673

100

0.418
  pilQ Legionella pneumophila strain ERS1305867

40.265

97.695

0.393
  pilQ Legionella pneumophila strain Lp02

40.118

97.695

0.392