Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV04_RS12500 Genome accession   NZ_AP024893
Coordinates   2717304..2718293 (+) Length   329 a.a.
NCBI ID   WP_390632046.1    Uniprot ID   -
Organism   Vibrio plantisponsor strain CECT 7581     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2712304..2723293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV04_RS12475 fldB 2712548..2713066 (+) 519 WP_102940969.1 flavodoxin FldB -
  OCV04_RS12480 ampD 2713069..2713611 (-) 543 WP_171138257.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OCV04_RS12485 nadC 2713745..2714632 (+) 888 WP_042484530.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV04_RS12490 - 2714901..2715344 (+) 444 WP_171138258.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OCV04_RS12495 pilB 2715360..2717048 (+) 1689 WP_171138259.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV04_RS20780 - 2717184..2717360 (-) 177 WP_390632044.1 hypothetical protein -
  OCV04_RS12500 pilC 2717304..2718293 (+) 990 WP_390632046.1 type II secretion system F family protein Machinery gene
  OCV04_RS12505 pilD 2718373..2719242 (+) 870 WP_171138260.1 A24 family peptidase Machinery gene
  OCV04_RS12510 coaE 2719246..2719854 (+) 609 WP_102940963.1 dephospho-CoA kinase -
  OCV04_RS12515 zapD 2719886..2720626 (+) 741 WP_102940962.1 cell division protein ZapD -
  OCV04_RS12520 yacG 2720672..2720875 (+) 204 WP_171138261.1 DNA gyrase inhibitor YacG -
  OCV04_RS12525 parC 2720942..2723221 (-) 2280 WP_171138262.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 35891.32 Da        Isoelectric Point: 9.1077

>NTDB_id=89223 OCV04_RS12500 WP_390632046.1 2717304..2718293(+) (pilC) [Vibrio plantisponsor strain CECT 7581]
MLTTGVPIVQALKLVGDNHRKPEMKSILTQISKGVEAGTPISKAMRNTSSHFDSLYVDLVQTGEQSGNLAEVFERLATYR
EKSEELRAKVIKALIYPAMVVLVALSVSYLMLTMVIPEFEAMFSGFGAELPWFTQQVLKLSHGVQAYSLVALVVTIASVV
AFRTARKKSSLFRLKTSRLGLKCPVIGSVLAKAAIAKFSRTLATSFSAGIPILSSLKTTAKTAGNVHFEYAIDEVHRDTA
SGMPMYIAMRNTEAFPEMVLQMVMIGEESGKLDDMLNKIASIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 990 bp        

>NTDB_id=89223 OCV04_RS12500 WP_390632046.1 2717304..2718293(+) (pilC) [Vibrio plantisponsor strain CECT 7581]
ATGCTGACGACGGGTGTTCCTATTGTTCAAGCACTGAAACTGGTTGGTGACAATCACCGTAAACCAGAAATGAAATCGAT
TCTGACTCAAATATCCAAAGGAGTTGAGGCCGGTACTCCCATTTCAAAAGCAATGCGTAACACCAGCAGCCACTTTGATT
CCTTGTATGTTGACTTAGTTCAGACTGGTGAACAATCCGGAAACCTAGCTGAAGTTTTTGAACGTTTAGCCACATACCGC
GAAAAAAGCGAAGAGTTGAGAGCAAAAGTTATTAAAGCATTGATTTACCCAGCAATGGTTGTACTTGTTGCCCTAAGTGT
CTCGTACTTGATGTTAACCATGGTGATACCGGAGTTTGAAGCCATGTTCAGTGGCTTTGGCGCAGAACTTCCTTGGTTTA
CGCAGCAGGTTTTAAAACTTTCGCACGGCGTTCAGGCTTATAGTTTGGTTGCTCTTGTTGTTACTATTGCGTCTGTTGTC
GCCTTTCGTACTGCAAGGAAAAAATCCTCACTGTTTCGCCTGAAAACCAGCCGCCTAGGATTAAAATGCCCTGTTATCGG
CAGCGTGTTAGCCAAAGCCGCTATCGCCAAATTCAGCCGCACACTGGCAACCAGTTTCAGCGCGGGTATTCCGATTCTCT
CCAGTTTAAAAACCACTGCTAAAACCGCTGGCAATGTCCACTTTGAATACGCCATAGATGAGGTTCATCGTGATACCGCG
TCGGGTATGCCTATGTATATCGCGATGCGAAATACGGAAGCTTTTCCTGAGATGGTATTGCAAATGGTAATGATCGGTGA
AGAGTCAGGAAAACTCGACGACATGCTGAATAAAATTGCTTCGATCTACGAGTTCGAGGTGGATAATACCGTCGATAATC
TGGGAAAAATCCTCGAACCTTTAATTATTGTGTTTCTTGGCGTGGTTGTCGGCGGGTTAGTAGTGGCAATGTACTTGCCA
ATCTTTAACTTAATGAGTGTGTTAGGGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(198-320)

Type II secretion system (T2SS), protein F (T2SSF)

(1-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

84.498

100

0.845
  pilC Vibrio campbellii strain DS40M4

72.948

100

0.729
  pilC Acinetobacter baumannii D1279779

45.427

99.696

0.453
  pilC Pseudomonas stutzeri DSM 10701

45.122

99.696

0.45
  pilC Acinetobacter baylyi ADP1

43.902

99.696

0.438
  pilC Legionella pneumophila strain ERS1305867

43.865

99.088

0.435
  pilG Neisseria gonorrhoeae MS11

41.159

99.696

0.41
  pilG Neisseria meningitidis 44/76-A

40.854

99.696

0.407
  pilC Thermus thermophilus HB27

38.369

100

0.386

Multiple sequence alignment