Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RZ534_RS08715 Genome accession   NZ_CP136643
Coordinates   1709823..1711073 (+) Length   416 a.a.
NCBI ID   WP_057079522.1    Uniprot ID   A0AB39J7C1
Organism   Bacillus altitudinis strain RS1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1704823..1716073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZ534_RS08690 (RZ534_08690) ymfI 1706234..1706962 (+) 729 WP_181891074.1 elongation factor P 5-aminopentanone reductase -
  RZ534_RS08695 (RZ534_08695) - 1707036..1707293 (+) 258 WP_008344693.1 DUF3243 domain-containing protein -
  RZ534_RS08700 (RZ534_08700) - 1707425..1708216 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  RZ534_RS08705 (RZ534_08705) - 1708240..1709151 (+) 912 WP_019744182.1 helix-turn-helix domain-containing protein -
  RZ534_RS08710 (RZ534_08710) pgsA 1709225..1709806 (+) 582 WP_008344688.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RZ534_RS08715 (RZ534_08715) cinA 1709823..1711073 (+) 1251 WP_057079522.1 competence/damage-inducible protein A Machinery gene
  RZ534_RS08720 (RZ534_08720) recA 1711251..1712294 (+) 1044 WP_007499478.1 recombinase RecA Machinery gene
  RZ534_RS08725 (RZ534_08725) rny 1712595..1714157 (+) 1563 WP_007499477.1 ribonuclease Y -
  RZ534_RS08730 (RZ534_08730) - 1714247..1715041 (+) 795 WP_019744184.1 TIGR00282 family metallophosphoesterase -
  RZ534_RS08735 (RZ534_08735) spoVS 1715244..1715504 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45713.82 Da        Isoelectric Point: 4.8143

>NTDB_id=892133 RZ534_RS08715 WP_057079522.1 1709823..1711073(+) (cinA) [Bacillus altitudinis strain RS1]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIANTLDKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEGDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHEDEKETERLL
KETEAQILERVGEYFYGYGDTSLAFEASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPEPHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLKLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=892133 RZ534_RS08715 WP_057079522.1 1709823..1711073(+) (cinA) [Bacillus altitudinis strain RS1]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCACAGGAAAGATCGAATTTTATTATCTTCTCAGGGGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCAAATACGCTCGATAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAGTCTATTCAAGAGTACTT
CCGTAAAACCGGACGTGATATGTCGCCGAACAACCGTAAACAGGCGCTCGTTCTAGAGGGATCTGATGTGCTCGTAAACC
GTTTCGGAATGGCACCTGGTATGTTTATACAAGAGGGAGATACGTTTTACATTCTGCTCCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAAGCGAAGCCGCTTATTTCTGAAAAACTCGGCCTAAAGGAAAAAATCGTGTCTGTTGTCTT
GCGTTTCTTTGGCATCGGTGAATCTCAGCTGGAAACAGATCTTGAAGATTTAATTGATGCACAGACCAATCCAACGATTG
CACCGCTTGCAGCTGACGGGGAAGTGACGCTAAGGCTGACAGCCAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGAACGGGTCGGCGAGTACTTCTACGGATATGGTGATACATCTCTTGCCTTTGAAGC
TTCAAAGGCCTTGCATGAACACGGGAAAACAGTAGCAGCGGCTGAAAGCCTGACTGGTGGTATGTTTTCAGAGTGGCTGA
CAGATCTTGAAGGGGCATCATCCATTTTAAACGGCAGTGTGGTTTGTTACACAAATCAAGTCAAGCAGCAAGTGCTGGGC
TGCCGTGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTCGCAGAAGGCGTTAGAAAACT
GACGGGAAGCGATATCGGTATTAGCTTTACAGGTGTGGCAGGTCCTGAACCACACGAGGGACAGCCGGTTGGAAAAGTAT
TTATCGGGCTATCGACAAAAGATCAGACAGACGTGTTTGAATGGATGTTTACTGGCAGTCGATCAGGCATTCGCAAGCGT
GCTGTGAAATATGGTTTGCACCACCTTCTCAAATTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

47.368

100

0.476
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

48.157

97.837

0.471
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392