Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   RZV17_RS14005 Genome accession   NZ_CP136580
Coordinates   3288520..3289650 (-) Length   376 a.a.
NCBI ID   WP_039404792.1    Uniprot ID   A0AB34PCL6
Organism   Xanthomonas cannabis strain DAR41331     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3283520..3294650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV17_RS13975 (RZV17_13935) - 3283725..3284672 (-) 948 WP_039404804.1 aspartate carbamoyltransferase catalytic subunit -
  RZV17_RS13980 (RZV17_13940) ruvX 3284686..3285153 (-) 468 WP_039404802.1 Holliday junction resolvase RuvX -
  RZV17_RS13985 (RZV17_13945) - 3285146..3285712 (-) 567 WP_039404799.1 YqgE/AlgH family protein -
  RZV17_RS13990 (RZV17_13950) - 3286021..3286587 (+) 567 WP_179454303.1 DNA-3-methyladenine glycosylase I -
  RZV17_RS13995 (RZV17_13955) - 3286624..3287523 (+) 900 WP_355604317.1 DUF72 domain-containing protein -
  RZV17_RS14000 (RZV17_13960) - 3287536..3288210 (-) 675 WP_039566430.1 YitT family protein -
  RZV17_RS14005 (RZV17_13965) pilU 3288520..3289650 (-) 1131 WP_039404792.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  RZV17_RS14010 (RZV17_13970) pilT 3289764..3290801 (-) 1038 WP_003489919.1 type IV pilus twitching motility protein PilT Machinery gene
  RZV17_RS14015 (RZV17_13975) - 3291129..3291821 (+) 693 WP_166745300.1 YggS family pyridoxal phosphate-dependent enzyme -
  RZV17_RS14020 (RZV17_13980) proC 3291865..3292719 (+) 855 WP_104579947.1 pyrroline-5-carboxylate reductase -
  RZV17_RS14025 (RZV17_13985) - 3293276..3293695 (+) 420 WP_039404742.1 HU family DNA-binding protein -
  RZV17_RS14030 (RZV17_13990) - 3293845..3294429 (+) 585 WP_355604323.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41982.24 Da        Isoelectric Point: 6.8287

>NTDB_id=891697 RZV17_RS14005 WP_039404792.1 3288520..3289650(-) (pilU) [Xanthomonas cannabis strain DAR41331]
MSTIDFTSFLKLMAHQKASDLFITSGMPPAIKVHGKISPITQTPLTAQQSRDLVLNVMTPSQREEFEKTHECNFAIGVSG
VGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPVIKTLAMTKRGIIIFVGATGTGKSTSLAAMIGYRNQNSTGHIIT
IEDPIEFVHKHEGCIITQREVGIDTDSWENALKNTLRQAPDVIMIGEVRTREGMDHAVAFAETGHLVLCTLHANNANQAM
DRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGRGRRVAMEIMLGTPLVQDYIRDGEIHKLKEIMKESTNLGMRTF
DQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDAKTLSQGLDGVEIAEVR

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=891697 RZV17_RS14005 WP_039404792.1 3288520..3289650(-) (pilU) [Xanthomonas cannabis strain DAR41331]
ATGAGCACCATCGACTTCACCTCCTTCCTCAAGCTGATGGCGCATCAGAAGGCGTCGGACCTGTTCATCACCTCCGGGAT
GCCGCCGGCGATCAAGGTGCATGGCAAGATCAGCCCGATTACGCAGACACCGTTGACCGCGCAGCAAAGCCGCGACCTGG
TGTTGAACGTGATGACGCCGTCGCAGCGCGAAGAGTTCGAAAAGACCCACGAGTGCAACTTCGCCATCGGCGTGTCCGGG
GTCGGGCGTTTCCGTGTGAGCTGCTTCTACCAGCGCAACCAGGTGGGCATGGTGCTGCGCCGGATCGAGACGCGCATTCC
TACCGTGGAAGAGCTGAGCCTGCCGCCGGTGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGTACCGGTAAATCGACCTCGCTGGCGGCGATGATCGGCTACCGCAACCAGAATTCCACCGGGCACATCATCACC
ATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAAGTTGGCATCGATACCGACAG
CTGGGAAAACGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGTACCCGCGAGGGCA
TGGATCACGCCGTGGCGTTTGCCGAAACCGGCCACCTGGTGCTGTGTACGCTGCACGCAAACAACGCCAACCAGGCGATG
GACCGCATCATCAACTTCTTCCCGGAAGACCGGCGCAACCAGCTGTTGATGGATCTGTCGCTCAATCTCAAGGGCGTGGT
CGCGCAGCAGCTGATTCCGACCCCGGATGGTCGCGGCCGGCGCGTGGCGATGGAGATCATGCTGGGCACACCGCTGGTGC
AGGACTACATCCGCGACGGCGAGATCCACAAGCTCAAAGAGATCATGAAGGAGTCCACCAACCTGGGCATGCGCACCTTC
GATCAGAGCCTGTTCGAGCTCTACCAGGCCGGCGAGATCAGCTACGAAGACGCCTTGCGCTACGCCGATTCGCAAAACGA
GGTGCGTTTGCGCATCAAGCTGTCGCAGGGCGGCGATGCCAAGACCTTGTCGCAGGGCCTGGATGGCGTGGAGATTGCCG
AAGTTCGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(117-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

67.847

97.606

0.662
  pilU Acinetobacter baylyi ADP1

63.866

94.947

0.606
  pilU Vibrio cholerae strain A1552

53.652

94.681

0.508
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.297

94.947

0.402
  pilT Acinetobacter baumannii strain A118

40.407

91.489

0.37
  pilT Acinetobacter nosocomialis M2

40.407

91.489

0.37
  pilT Acinetobacter baumannii D1279779

40.407

91.489

0.37
  pilT Pseudomonas aeruginosa PAK

41.194

89.096

0.367