Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   RYH70_RS18530 Genome accession   NZ_CP136538
Coordinates   4003458..4004525 (-) Length   355 a.a.
NCBI ID   WP_026948241.1    Uniprot ID   A0A9Q3W3F5
Organism   Alloalcanivorax xenomutans strain GOM8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3998458..4009525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYH70_RS18505 (RYH70_18505) aroK 3998949..3999485 (-) 537 WP_026948240.1 shikimate kinase AroK -
  RYH70_RS18510 (RYH70_18510) pilQ 3999482..4001632 (-) 2151 WP_022995173.1 type IV pilus secretin PilQ Machinery gene
  RYH70_RS18515 (RYH70_18515) - 4001653..4002186 (-) 534 WP_022995172.1 pilus assembly protein PilP -
  RYH70_RS18520 (RYH70_18520) - 4002204..4002890 (-) 687 WP_022995171.1 type 4a pilus biogenesis protein PilO -
  RYH70_RS18525 (RYH70_18525) - 4002877..4003461 (-) 585 WP_022995170.1 PilN domain-containing protein -
  RYH70_RS18530 (RYH70_18530) pilM 4003458..4004525 (-) 1068 WP_026948241.1 pilus assembly protein PilM Machinery gene
  RYH70_RS18535 (RYH70_18535) - 4004860..4007385 (+) 2526 WP_317009488.1 penicillin-binding protein 1A -
  RYH70_RS18540 (RYH70_18540) - 4007416..4008711 (-) 1296 WP_317009489.1 DKNYY domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38403.89 Da        Isoelectric Point: 4.3939

>NTDB_id=891473 RYH70_RS18530 WP_026948241.1 4003458..4004525(-) (pilM) [Alloalcanivorax xenomutans strain GOM8]
MLPFLRKKAQAMLGVDISSTAVKLLELSRSGGRFKVESYAVEPLTANTVVEKNITDVEGVGDVIARVVARARPGVKAAAV
AVPGSATITKVIEMDASLSEDDMETQLRVEADQYIPFPLDEVRMDFQVLGATEDTPDRVEVLVVASRTENVEMRADALEI
GNLQAKVVDVEAYAMERAFQLVAPTLPNADELETVAVFDIGATMTTLNVFHQGRSVYTREQLFGGKQLTEEIQRRYGISM
EEAGLAKKTGELPEDYESEVLQPFKDAIVQQINRSLQFFYGSTQFNQVDYILLAGGSASITGLPALIQDKVGAGCSLADP
FAGMSKAGKVNVRALANDAPAMMIACGLALRSFEL

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=891473 RYH70_RS18530 WP_026948241.1 4003458..4004525(-) (pilM) [Alloalcanivorax xenomutans strain GOM8]
GTGCTGCCTTTTCTAAGAAAAAAGGCCCAAGCCATGCTGGGGGTCGATATCAGTTCCACCGCCGTGAAGCTGCTGGAGCT
ATCCAGGTCCGGGGGGCGCTTCAAGGTCGAGAGCTACGCCGTCGAGCCGCTCACGGCCAATACCGTGGTGGAAAAAAACA
TCACCGATGTGGAAGGGGTCGGGGACGTGATCGCCCGGGTGGTCGCCCGGGCCCGTCCCGGGGTCAAGGCCGCCGCCGTG
GCGGTGCCGGGCTCCGCCACCATCACCAAGGTGATCGAAATGGACGCCTCGCTCAGCGAGGACGATATGGAAACGCAATT
GCGGGTGGAGGCGGACCAGTACATTCCATTCCCGCTGGATGAAGTGCGCATGGATTTTCAGGTGCTCGGCGCCACCGAGG
ATACGCCCGACCGGGTGGAAGTTCTGGTGGTGGCGTCGCGCACGGAAAATGTGGAGATGCGCGCCGATGCTCTGGAGATC
GGTAACCTTCAGGCCAAGGTGGTGGACGTGGAGGCCTACGCCATGGAGCGGGCCTTCCAACTGGTGGCGCCGACCCTGCC
CAACGCCGATGAACTGGAAACGGTGGCGGTGTTCGATATCGGCGCCACCATGACCACTCTCAATGTGTTCCATCAGGGGC
GCAGCGTCTATACCCGCGAGCAACTGTTCGGCGGCAAGCAGCTCACCGAGGAAATTCAGCGCCGTTACGGCATCTCCATG
GAGGAGGCCGGGCTGGCGAAGAAAACCGGTGAATTGCCGGAGGACTATGAGAGCGAGGTGCTGCAGCCGTTCAAGGACGC
CATCGTCCAGCAGATCAACCGGTCCCTGCAGTTCTTCTATGGATCCACCCAGTTCAATCAGGTGGATTACATCCTGCTGG
CTGGCGGTTCGGCTTCCATCACCGGATTGCCGGCGCTGATCCAGGACAAGGTGGGTGCCGGGTGTTCCCTGGCCGATCCC
TTCGCCGGTATGAGCAAGGCCGGCAAGGTCAATGTCCGGGCCCTGGCCAACGACGCCCCGGCGATGATGATCGCCTGCGG
CCTGGCGCTGAGGAGCTTTGAACTATGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.65

99.718

0.555
  comM Acinetobacter nosocomialis M2

55.65

99.718

0.555
  comM Acinetobacter baylyi ADP1

52.542

99.718

0.524
  pilM Legionella pneumophila strain ERS1305867

46.893

99.718

0.468