Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RGE70_RS01150 Genome accession   NZ_CP136522
Coordinates   255857..257128 (-) Length   423 a.a.
NCBI ID   WP_310469722.1    Uniprot ID   -
Organism   Shewanella sp. DAU334     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 250857..262128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RGE70_RS01120 (RGE70_01120) - 251291..252718 (+) 1428 WP_310472885.1 pitrilysin family protein -
  RGE70_RS01125 (RGE70_01125) mutT 252764..253156 (-) 393 WP_310469717.1 8-oxo-dGTP diphosphatase MutT -
  RGE70_RS01130 (RGE70_01130) yacG 253153..253392 (-) 240 WP_310469718.1 DNA gyrase inhibitor YacG -
  RGE70_RS01135 (RGE70_01135) zapD 253441..254175 (-) 735 WP_310469719.1 cell division protein ZapD -
  RGE70_RS01140 (RGE70_01140) coaE 254184..254789 (-) 606 WP_310469720.1 dephospho-CoA kinase -
  RGE70_RS01145 (RGE70_01145) pilD 254881..255795 (-) 915 WP_310469721.1 A24 family peptidase Machinery gene
  RGE70_RS01150 (RGE70_01150) pilC 255857..257128 (-) 1272 WP_310469722.1 type II secretion system F family protein Machinery gene
  RGE70_RS01155 (RGE70_01155) pilB 257175..258881 (-) 1707 WP_310469723.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RGE70_RS01160 - 259290..259392 (-) 103 Protein_228 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  RGE70_RS01165 (RGE70_01165) nadC 260394..261278 (-) 885 WP_310469724.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RGE70_RS01170 (RGE70_01170) ampD 261496..262038 (+) 543 WP_310469725.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46043.18 Da        Isoelectric Point: 10.3880

>NTDB_id=891323 RGE70_RS01150 WP_310469722.1 255857..257128(-) (pilC) [Shewanella sp. DAU334]
MAIATRRSKQTRDRTKAQKHQPKVVTYTWSGLSRDGRRTSGELRGVSSAEIRAQLKAQGVVPKIVRKKSTPLFSSDKKIK
PMDIAMATRQIATMLAAGVPIVTTLELLGKGHDKPKMRELLSTIVNDVQAGIPLSDALRPHRLHFDDLYVDLVAAGEHSG
SLDAVFDRIATYREKSEALKSKIKKAMFYPAAVVIVAILVTALLLLFVVPQFETIFQGFGAELPGFTQMVVNLSRWLQAS
WYIFAIAIIGGIWGFRRTHRSSQKFRDKIDALVLKIPAIGEILHKGAMAKFARTLATTFAAGVPLIDGLESAAGASGNAV
YKKAVLDIRTEVISGMQMNVAMRTTGVFPDMMIQMVMIGEEAGSLDSMLNKVANIYEMQVDDAVDGLSSLIEPVMMVVIG
TVVGGLIVAMYLPIFQLGNVVGG

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=891323 RGE70_RS01150 WP_310469722.1 255857..257128(-) (pilC) [Shewanella sp. DAU334]
ATGGCGATTGCAACCAGACGTTCTAAACAAACGCGAGATAGAACTAAAGCCCAAAAACACCAGCCTAAGGTGGTGACATA
CACTTGGTCAGGCCTCAGCCGAGACGGCCGCCGCACCAGTGGTGAGCTACGCGGGGTGTCTAGCGCCGAGATCAGAGCGC
AACTTAAAGCGCAAGGTGTAGTGCCAAAAATAGTCCGTAAAAAGTCAACACCGCTGTTTAGCTCTGACAAAAAAATAAAG
CCCATGGACATTGCCATGGCCACTCGCCAAATTGCCACAATGCTGGCAGCTGGCGTACCAATTGTTACCACGCTTGAACT
ACTTGGCAAGGGGCATGACAAGCCCAAAATGCGTGAACTACTCAGCACCATTGTTAATGATGTGCAAGCCGGTATTCCGC
TGTCGGATGCCCTACGCCCACACCGCCTTCATTTTGACGATTTATATGTGGATTTAGTTGCTGCAGGTGAGCATTCTGGC
TCGCTCGATGCCGTATTTGATCGCATCGCAACTTACCGAGAAAAGTCCGAAGCATTAAAATCAAAAATCAAAAAAGCCAT
GTTTTACCCAGCCGCAGTGGTTATTGTGGCAATTTTGGTTACCGCGTTATTGCTGTTATTTGTAGTACCGCAATTTGAAA
CAATATTTCAGGGTTTTGGCGCTGAACTCCCGGGCTTTACCCAAATGGTGGTGAATTTATCACGCTGGCTACAAGCCTCG
TGGTATATATTTGCGATTGCAATTATTGGTGGTATTTGGGGCTTTAGGCGCACACATCGCAGCTCACAAAAGTTTCGAGA
TAAAATCGACGCATTAGTGTTAAAAATCCCAGCCATTGGCGAAATTTTACATAAAGGCGCCATGGCCAAATTTGCCCGCA
CATTGGCTACAACCTTTGCAGCAGGTGTACCGTTAATTGATGGTTTAGAGTCTGCCGCTGGCGCCTCTGGCAATGCCGTA
TATAAAAAAGCAGTGCTTGATATTCGCACTGAGGTTATATCTGGTATGCAAATGAATGTGGCCATGCGCACGACAGGCGT
GTTCCCTGACATGATGATCCAAATGGTGATGATTGGTGAAGAAGCCGGCTCACTCGATAGTATGCTCAATAAGGTCGCCA
ATATTTATGAAATGCAGGTTGATGACGCCGTTGATGGCTTATCGAGTTTAATTGAGCCAGTTATGATGGTGGTGATTGGC
ACTGTTGTTGGTGGCCTAATTGTGGCAATGTATTTACCGATATTCCAGCTCGGTAACGTTGTTGGCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.456

93.381

0.527
  pilC Acinetobacter baumannii D1279779

50.503

94.09

0.475
  pilC Acinetobacter baylyi ADP1

50.126

93.853

0.47
  pilC Legionella pneumophila strain ERS1305867

48.762

95.508

0.466
  pilC Vibrio cholerae strain A1552

49.497

94.09

0.466
  pilC Vibrio campbellii strain DS40M4

45.771

95.035

0.435
  pilG Neisseria gonorrhoeae MS11

44.386

90.544

0.402
  pilG Neisseria meningitidis 44/76-A

43.864

90.544

0.397