Detailed information NTG0891322

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RGE70_RS01145
• Genome accession: NZ_CP136522
• Coordinates: 254881..255795 (-)
• Length: 304 a.a.
• NCBI ID: WP_310469721.1
• Uniprot ID: -
• Organism: Shewanella sp. DAU334
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 249881..260795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGE70_RS01115 (RGE70_01115)	-	249900..251231 (+)	1332	WP_310469716.1	pitrilysin family protein	-
RGE70_RS01120 (RGE70_01120)	-	251291..252718 (+)	1428	WP_310472885.1	pitrilysin family protein	-
RGE70_RS01125 (RGE70_01125)	mutT	252764..253156 (-)	393	WP_310469717.1	8-oxo-dGTP diphosphatase MutT	-
RGE70_RS01130 (RGE70_01130)	yacG	253153..253392 (-)	240	WP_310469718.1	DNA gyrase inhibitor YacG	-
RGE70_RS01135 (RGE70_01135)	zapD	253441..254175 (-)	735	WP_310469719.1	cell division protein ZapD	-
RGE70_RS01140 (RGE70_01140)	coaE	254184..254789 (-)	606	WP_310469720.1	dephospho-CoA kinase	-
RGE70_RS01145 (RGE70_01145)	pilD	254881..255795 (-)	915	WP_310469721.1	A24 family peptidase	Machinery gene
RGE70_RS01150 (RGE70_01150)	pilC	255857..257128 (-)	1272	WP_310469722.1	type II secretion system F family protein	Machinery gene
RGE70_RS01155 (RGE70_01155)	pilB	257175..258881 (-)	1707	WP_310469723.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RGE70_RS01160	-	259290..259392 (-)	103	Protein_228	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 304 a.a.
• Molecular weight: 33723.07 Da
• Isoelectric Point: 7.2166

>NTDB_id=891322 RGE70_RS01145 WP_310469721.1 254881..255795(-) (pilD) [Shewanella sp. DAU334]
MTELILVFKQIPWLFVALSFVFAAVIGSFLNVVIHRLPVMMKREWQQECNHYLAEYKKSVFEPNQQTLEAPIDAFPDKYN
LVVPGSACPKCKANIKAVHNLPVLGWLLLKGQCAACSNRISARYPLVELITGCLVAFLAWHFGPTEQFVYTTVLTFALIA
LTGIDLDEMLLPDQITLPLLWLGLILNLSGTFVSISDAIIGAAAGYLSLWSIFWAFKLLTGKEGMGYGDFKLLAVFGAWF
GWQVLPLVILLSSLVGAIVGLSLIAFKKLNQGNPIPFGPYLAIAGWIAMIWGESITQWYLSTLY

Nucleotide

• Length: 915 bp

>NTDB_id=891322 RGE70_RS01145 WP_310469721.1 254881..255795(-) (pilD) [Shewanella sp. DAU334]
ATGACTGAATTGATCCTCGTTTTTAAACAAATACCTTGGTTATTTGTTGCGCTTAGCTTTGTGTTTGCTGCCGTGATTGG
CAGCTTTTTAAATGTCGTGATTCACCGCTTGCCCGTGATGATGAAACGAGAATGGCAACAAGAGTGTAATCACTACCTAG
CGGAATATAAAAAATCAGTATTCGAGCCCAACCAACAAACCCTAGAAGCCCCGATTGACGCTTTCCCAGACAAGTACAAC
CTTGTTGTACCTGGCTCGGCCTGCCCTAAATGTAAAGCCAACATTAAAGCCGTACATAACTTGCCAGTTTTAGGCTGGTT
ACTATTAAAAGGCCAGTGTGCAGCCTGTAGTAATCGCATCTCAGCCCGTTATCCGTTGGTAGAGTTAATAACGGGTTGTT
TAGTGGCATTTTTGGCGTGGCATTTTGGCCCAACAGAGCAGTTTGTCTATACCACAGTGCTAACTTTTGCGCTTATCGCG
CTGACGGGAATCGATCTTGATGAAATGCTGCTTCCCGACCAAATTACCTTGCCACTGTTATGGCTGGGATTAATACTCAA
TTTAAGTGGCACATTTGTGTCAATATCTGACGCTATTATTGGTGCCGCGGCAGGGTATTTAAGCCTCTGGAGTATTTTTT
GGGCCTTTAAGCTGCTCACTGGCAAAGAGGGGATGGGTTATGGCGATTTCAAATTATTAGCGGTATTTGGCGCATGGTTT
GGCTGGCAGGTATTACCTTTGGTTATATTGTTATCGTCTCTAGTCGGAGCCATTGTCGGCCTATCGCTCATCGCCTTTAA
AAAACTCAATCAGGGTAACCCTATTCCATTTGGGCCTTACCTTGCTATTGCCGGCTGGATTGCCATGATATGGGGCGAGT
CAATCACGCAATGGTACCTTTCAACACTGTACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (153-261)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-142)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.02	98.026	0.52
pilD	Vibrio cholerae strain A1552	51.515	97.697	0.503
pilD	Acinetobacter baumannii D1279779	46.358	99.342	0.461
pilD	Acinetobacter nosocomialis M2	46.026	99.342	0.457
pilD	Neisseria gonorrhoeae MS11	44.138	95.395	0.421