Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU38_RS12610 Genome accession   NZ_AP024885
Coordinates   2701253..2702383 (-) Length   376 a.a.
NCBI ID   WP_261823282.1    Uniprot ID   -
Organism   Vibrio neonatus strain JCM 21521     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2696253..2707383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU38_RS12580 hemF 2696876..2697781 (-) 906 WP_261823279.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU38_RS12585 - 2697785..2698342 (-) 558 WP_261823280.1 L-threonylcarbamoyladenylate synthase -
  OCU38_RS12590 purE 2698526..2699011 (+) 486 WP_023405243.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU38_RS12595 - 2699016..2700131 (+) 1116 WP_021714833.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU38_RS12600 - 2700206..2700757 (-) 552 WP_261823281.1 type I DNA topoisomerase -
  OCU38_RS12605 - 2700777..2701250 (-) 474 WP_021714832.1 DUF494 family protein -
  OCU38_RS12610 dprA 2701253..2702383 (-) 1131 WP_261823282.1 DNA-processing protein DprA Machinery gene
  OCU38_RS12615 def 2702493..2703002 (+) 510 WP_023405246.1 peptide deformylase -
  OCU38_RS12620 fmt 2703020..2703967 (+) 948 WP_261823283.1 methionyl-tRNA formyltransferase -
  OCU38_RS12625 rsmB 2704023..2705303 (+) 1281 WP_261823284.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU38_RS12630 trkA 2705339..2706715 (+) 1377 WP_023405249.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41053.07 Da        Isoelectric Point: 6.6871

>NTDB_id=89121 OCU38_RS12610 WP_261823282.1 2701253..2702383(-) (dprA) [Vibrio neonatus strain JCM 21521]
MTEQQIIAWLTLSMTPRLSGVKLQKIIEFTSPLELINLSKKELFDLKFTDLQVRHLTDKANANVERCLNWLSKDGNHLLI
CEDDSAYPQLLKEIPCYPPLLFVQGEVSALSSNQIGVVGSRNSSQDGLYITRQFSAELTQLGVTITSGLALGVDGHAHQA
CLDHKGTTVAVLGSGFDYLYPKQHQRLAERIKASGALVSEFPPFYPLRAYNFPRRNRIISGLSVGVLVVEAAAKSGSLIT
ARFALEQGRDVYAVPGSVLNPNAMGCNNLIRDGAVLVRSAQDIIQEMNGLIDWSQTEQQGLGFHAQLPAKNSERCASESD
LNQGLLNLLGDKPTAVDFLAQSTHLPINQVMMQLLELELKGLVASVGGGYIRLRGS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=89121 OCU38_RS12610 WP_261823282.1 2701253..2702383(-) (dprA) [Vibrio neonatus strain JCM 21521]
ATGACAGAACAACAGATAATAGCTTGGTTAACCTTGTCGATGACGCCTCGTTTAAGTGGGGTTAAGCTGCAAAAAATCAT
TGAGTTTACCTCTCCGTTAGAGCTCATCAATTTATCTAAAAAAGAGTTATTCGACTTAAAATTTACCGATTTACAAGTTC
GCCATTTAACAGACAAAGCCAACGCCAATGTTGAACGTTGCTTAAACTGGCTGAGCAAAGACGGTAACCACTTGCTGATC
TGTGAAGATGACAGCGCTTATCCTCAGTTATTAAAAGAGATCCCATGTTATCCGCCATTGTTGTTTGTGCAGGGTGAGGT
ATCGGCTTTAAGTTCCAATCAGATTGGCGTTGTAGGCAGTCGCAATAGTAGCCAAGACGGTTTGTACATTACGCGTCAGT
TTTCTGCGGAGTTAACGCAACTTGGGGTGACGATAACCAGTGGGCTTGCTTTAGGTGTCGATGGGCATGCTCATCAAGCG
TGTCTTGATCATAAGGGGACGACAGTTGCGGTGTTAGGTAGTGGTTTTGACTACCTCTACCCAAAACAGCATCAGCGTTT
AGCTGAACGCATTAAAGCGAGTGGCGCATTGGTGTCTGAGTTTCCTCCTTTTTATCCCCTTAGAGCGTATAACTTCCCTA
GACGAAACCGAATTATTAGTGGTTTATCGGTAGGAGTGTTGGTCGTTGAAGCGGCGGCGAAAAGTGGTTCTCTGATTACG
GCTCGATTTGCTTTAGAGCAAGGCAGGGATGTGTATGCCGTCCCAGGCTCTGTGCTCAATCCTAATGCGATGGGCTGTAA
TAACCTGATTCGAGATGGAGCGGTGCTAGTACGCAGTGCACAAGATATTATCCAAGAGATGAATGGCTTGATTGATTGGT
CTCAGACCGAGCAACAAGGTTTGGGTTTTCATGCTCAATTGCCAGCAAAAAACAGCGAAAGATGCGCGTCAGAATCAGAT
TTAAATCAAGGTTTACTTAATCTATTGGGAGATAAGCCAACAGCGGTTGATTTTTTGGCACAAAGCACCCATTTACCCAT
TAATCAGGTTATGATGCAGTTATTAGAACTGGAGCTCAAAGGACTCGTGGCTTCAGTAGGTGGTGGTTATATTAGATTAA
GGGGGAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(316-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.067

99.734

0.489
  dprA Vibrio cholerae strain A1552

48.267

99.734

0.481
  dprA Glaesserella parasuis strain SC1401

40.909

99.468

0.407
  dprA Haemophilus influenzae Rd KW20

45.075

89.096

0.402
  dprA Acinetobacter baylyi ADP1

38.624

100

0.388
  dprA Legionella pneumophila strain ERS1305867

47.541

81.117

0.386
  dprA Neisseria meningitidis strain C311

35.802

100

0.386
  dprA Neisseria meningitidis MC58

35.802

100

0.386
  dprA Neisseria gonorrhoeae strain FA1090

35.661

100

0.38
  dprA Neisseria gonorrhoeae MS11

35.411

100

0.378

Multiple sequence alignment