Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RX140_RS12335 Genome accession   NZ_CP136358
Coordinates   2525681..2526139 (-) Length   152 a.a.
NCBI ID   WP_002365911.1    Uniprot ID   Q8VT46
Organism   Enterococcus faecalis strain ES-2953     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2520681..2531139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX140_RS12325 (RX140_12325) - 2522729..2523127 (-) 399 WP_002370287.1 lipocalin-like domain-containing protein -
  RX140_RS12330 (RX140_12330) - 2523084..2525576 (-) 2493 WP_021732972.1 ATP-binding protein -
  RX140_RS12335 (RX140_12335) ssb 2525681..2526139 (-) 459 WP_002365911.1 single-stranded DNA-binding protein Machinery gene
  RX140_RS12340 (RX140_12340) - 2526234..2526716 (-) 483 WP_002377938.1 hypothetical protein -
  RX140_RS12345 (RX140_12345) - 2526748..2527137 (-) 390 WP_002360791.1 TcpE family conjugal transfer membrane protein -
  RX140_RS12350 (RX140_12350) - 2527137..2527397 (-) 261 WP_010706916.1 hypothetical protein -
  RX140_RS12355 (RX140_12355) - 2527402..2528436 (-) 1035 WP_002403100.1 conjugal transfer protein -
  RX140_RS12360 (RX140_12360) - 2528429..2528743 (-) 315 WP_002360796.1 hypothetical protein -
  RX140_RS12365 (RX140_12365) - 2528743..2529159 (-) 417 WP_002401419.1 thioredoxin domain-containing protein -
  RX140_RS12370 (RX140_12370) - 2529143..2529760 (-) 618 WP_002377936.1 hypothetical protein -
  RX140_RS12375 (RX140_12375) - 2529763..2531034 (-) 1272 WP_002415819.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17179.08 Da        Isoelectric Point: 4.6511

>NTDB_id=890294 RX140_RS12335 WP_002365911.1 2525681..2526139(-) (ssb) [Enterococcus faecalis strain ES-2953]
MINNVTLVGRLTKDPDLRYTQSGTAVGQFTLAINRNFTNANNEREADFINCVIWRKAAESLANYATKGTLIGLTGRIQTR
NYENQQGQRIYVTEVVTESFQLLESREVNEQRKEQATGKATFDKQSMDKPDPLDPFSPENSIVDISDNDLPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=890294 RX140_RS12335 WP_002365911.1 2525681..2526139(-) (ssb) [Enterococcus faecalis strain ES-2953]
TTGATTAATAACGTTACATTAGTTGGACGATTAACCAAAGACCCAGATTTAAGGTATACGCAAAGTGGAACAGCCGTAGG
TCAATTTACGTTGGCCATTAATCGCAACTTTACCAATGCTAACAATGAAAGGGAAGCAGATTTTATCAACTGTGTTATTT
GGCGGAAAGCTGCAGAGTCATTAGCAAATTATGCAACAAAAGGGACTCTGATCGGTTTAACTGGTCGCATTCAAACAAGA
AACTATGAGAATCAACAAGGCCAGCGTATTTATGTAACTGAGGTTGTCACAGAAAGCTTCCAACTATTAGAATCAAGAGA
AGTAAACGAGCAACGAAAAGAACAGGCTACAGGTAAAGCTACGTTTGATAAACAGTCAATGGATAAACCTGATCCTCTGG
ATCCATTTTCGCCAGAAAATAGCATAGTGGATATTTCTGATAATGACCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8VT46

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.632
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.283

100

0.572
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

69.737

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

50

76.316

0.382
  ssbB Streptococcus sobrinus strain NIDR 6715-7

53.774

69.737

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

49.138

76.316

0.375
  ssbB/cilA Streptococcus pneumoniae Rx1

48.276

76.316

0.368
  ssbB/cilA Streptococcus pneumoniae D39

48.276

76.316

0.368
  ssbB/cilA Streptococcus pneumoniae R6

48.276

76.316

0.368
  ssbB/cilA Streptococcus mitis SK321

48.276

76.316

0.368