Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU48_RS13030 Genome accession   NZ_AP024878
Coordinates   2816875..2818005 (-) Length   376 a.a.
NCBI ID   WP_141346975.1    Uniprot ID   -
Organism   Vibrio inusitatus strain LMG 23434     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2811875..2823005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS13000 hemF 2812512..2813417 (-) 906 WP_141346971.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU48_RS13005 - 2813421..2813978 (-) 558 WP_167496231.1 L-threonylcarbamoyladenylate synthase -
  OCU48_RS13010 purE 2814163..2814648 (+) 486 WP_021714834.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU48_RS13015 - 2814653..2815768 (+) 1116 WP_141346972.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU48_RS13020 - 2815837..2816391 (-) 555 WP_141346973.1 type I DNA topoisomerase -
  OCU48_RS13025 - 2816399..2816872 (-) 474 WP_141346974.1 DUF494 family protein -
  OCU48_RS13030 dprA 2816875..2818005 (-) 1131 WP_141346975.1 DNA-processing protein DprA Machinery gene
  OCU48_RS13035 def 2818115..2818627 (+) 513 WP_141346976.1 peptide deformylase -
  OCU48_RS13040 fmt 2818641..2819588 (+) 948 WP_141346977.1 methionyl-tRNA formyltransferase -
  OCU48_RS13045 rsmB 2819641..2820930 (+) 1290 WP_141346978.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU48_RS13050 trkA 2820958..2822334 (+) 1377 WP_141346979.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41447.62 Da        Isoelectric Point: 7.1499

>NTDB_id=89028 OCU48_RS13030 WP_141346975.1 2816875..2818005(-) (dprA) [Vibrio inusitatus strain LMG 23434]
MTEQQITAWLTLSMTPRLSGVRLQKILEYLSPQELLSLSKKELYSLKFTESQVRFLTAKSNQNVDKCLEWATKDGNHLLT
AEDKDHYPPLLKEIPSFPPTLFVQGEVEILCSTQVGIVGSRNSSQDGLYITRQFSSELTNVGVTITSGLALGVDGHAHQA
CLEQNGRTIAVLGSGFDFLYPKQHKSLAMRIRENGALVSEFPPFYPPRSYNFPRRNRIISGLSVGVLVVEAAKKSGSLIT
ARFALEQGRDVYAVPGSILNPNAAGCNQLLRDGAILVRDVHDIVHEINGLVNWSSTIQQKAVLSLPLPVKKEEERGQIEA
GNQPILDLLGERPVAVDFLAERTHLPVNQVMMQLLELELQGIVASVVGGYIRLRGS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=89028 OCU48_RS13030 WP_141346975.1 2816875..2818005(-) (dprA) [Vibrio inusitatus strain LMG 23434]
ATGACAGAACAACAGATTACAGCATGGCTTACCCTTAGTATGACGCCTCGTTTAAGTGGAGTTAGGCTGCAGAAAATTCT
TGAGTATCTTTCCCCACAAGAGCTGTTATCTCTTTCAAAAAAGGAGCTGTACTCTCTCAAGTTTACCGAATCTCAGGTGC
GATTTTTAACGGCCAAGTCGAATCAAAATGTTGATAAATGCTTAGAATGGGCAACTAAAGATGGTAATCATTTACTCACT
GCTGAAGACAAAGACCATTATCCGCCTTTGTTGAAGGAAATTCCTAGCTTTCCTCCGACGCTGTTTGTGCAAGGAGAGGT
GGAAATATTGTGTTCGACCCAAGTGGGTATCGTCGGTAGTCGAAATAGCTCTCAAGATGGCTTGTATATTACTCGCCAGT
TTTCATCAGAGTTGACTAATGTAGGGGTAACAATCACAAGCGGTCTTGCTTTGGGGGTGGATGGTCATGCGCATCAAGCT
TGTTTAGAGCAGAACGGCAGAACTATTGCAGTATTAGGGAGCGGCTTTGATTTCTTGTACCCAAAGCAACACAAGTCGTT
AGCAATGCGAATTAGAGAAAATGGCGCTCTTGTTTCAGAGTTCCCTCCTTTTTATCCACCTAGATCGTATAACTTTCCAA
GACGTAATAGAATAATTAGTGGCTTGTCCGTTGGCGTGCTGGTGGTTGAGGCTGCGAAAAAAAGTGGATCTTTGATAACG
GCCCGTTTTGCCTTAGAACAAGGACGCGATGTGTACGCTGTTCCGGGGTCGATACTCAACCCCAATGCGGCCGGGTGTAA
TCAATTACTTCGTGATGGAGCAATATTAGTGAGAGATGTTCACGATATTGTTCATGAAATTAATGGCTTAGTTAACTGGT
CTTCTACAATACAACAAAAGGCAGTTTTATCTTTGCCGTTGCCAGTTAAGAAGGAAGAAGAAAGGGGACAAATTGAGGCA
GGAAATCAGCCAATACTGGATCTGCTAGGAGAGAGACCAGTGGCCGTTGATTTTTTAGCAGAAAGGACCCATTTACCCGT
AAATCAGGTTATGATGCAGTTATTAGAGCTGGAGCTACAGGGTATAGTGGCTTCAGTCGTCGGTGGTTACATTAGATTAA
GGGGGAGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(320-369)

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

50.396

100

0.508
  dprA Vibrio cholerae strain A1552

47.849

98.936

0.473
  dprA Glaesserella parasuis strain SC1401

43.432

99.202

0.431
  dprA Neisseria meningitidis strain C311

38.821

100

0.42
  dprA Neisseria meningitidis MC58

38.821

100

0.42
  dprA Legionella pneumophila strain ERS1305867

42.091

99.202

0.418
  dprA Haemophilus influenzae Rd KW20

45.21

88.83

0.402
  dprA Neisseria gonorrhoeae strain FA1090

37.406

100

0.399
  dprA Neisseria gonorrhoeae MS11

37.406

100

0.399
  dprA Acinetobacter baylyi ADP1

38.259

100

0.386

Multiple sequence alignment